Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1105
         (264 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    26   3.2  
U41028-5|AAA82358.1|  185|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/71 (19%), Positives = 27/71 (38%)
 Frame = +3

Query: 18  RCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSR 197
           R  P+H  +    +      R  P+H  + P  ++     R  P+H  +    ++     
Sbjct: 447 RSLPAHPLILLQPSQQQNQLRSLPAHPLILPRPSLPLNQLRSLPAHPLILLQPSLPQNQL 506

Query: 198 RCFPSHDDVFP 230
           R  P+H  + P
Sbjct: 507 RSQPAHPLILP 517



 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/71 (19%), Positives = 27/71 (38%)
 Frame = +2

Query: 38  RCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSR 217
           R  P+H  +    +      R  P+H  + P  ++     R  P+H  +    ++     
Sbjct: 447 RSLPAHPLILLQPSQQQNQLRSLPAHPLILPRPSLPLNQLRSLPAHPLILLQPSLPQNQL 506

Query: 218 RCFPSHDDVFP 250
           R  P+H  + P
Sbjct: 507 RSQPAHPLILP 517



 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/68 (19%), Positives = 26/68 (38%)
 Frame = +1

Query: 7   PSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCF 186
           P+H  +    +      R  P+H  + P  ++     R  P+H  +    ++     R  
Sbjct: 450 PAHPLILLQPSQQQNQLRSLPAHPLILPRPSLPLNQLRSLPAHPLILLQPSLPQNQLRSQ 509

Query: 187 PSHDDVFP 210
           P+H  + P
Sbjct: 510 PAHPLILP 517


>U41028-5|AAA82358.1|  185|Caenorhabditis elegans Hypothetical
           protein C25G6.1 protein.
          Length = 185

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
 Frame = +2

Query: 101 CFPSHDDVFPVTTMFSQSRRCF-PSHDDVFPVTTMFSQSRRCFPSHDDVFPVR 256
           C    D + P     +    CF  +   V P    + Q + CFP  D   PV+
Sbjct: 72  CVKIIDPMSPGVNYVTFKSDCFYQTQIQVNPTNLSYIQGKTCFPYQDGSAPVK 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,304,735
Number of Sequences: 27780
Number of extensions: 146361
Number of successful extensions: 503
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)