Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1105
         (264 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          20   4.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   4.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   5.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    19   7.8  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 245 KHRRDWENIVVTGKTSS*LGKHRR 174
           K +R W     + +T+S  G HR+
Sbjct: 42  KRKRSWSRPRESAQTTSKAGIHRK 65



 Score = 20.2 bits (40), Expect = 4.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 225 KHRRDWENIVVTGKTSS*LGKHRR 154
           K +R W     + +T+S  G HR+
Sbjct: 42  KRKRSWSRPRESAQTTSKAGIHRK 65



 Score = 20.2 bits (40), Expect = 4.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 205 KHRRDWENIVVTGKTSS*LGKHRR 134
           K +R W     + +T+S  G HR+
Sbjct: 42  KRKRSWSRPRESAQTTSKAGIHRK 65



 Score = 20.2 bits (40), Expect = 4.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 185 KHRRDWENIVVTGKTSS*LGKHRR 114
           K +R W     + +T+S  G HR+
Sbjct: 42  KRKRSWSRPRESAQTTSKAGIHRK 65



 Score = 20.2 bits (40), Expect = 4.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 165 KHRRDWENIVVTGKTSS*LGKHRR 94
           K +R W     + +T+S  G HR+
Sbjct: 42  KRKRSWSRPRESAQTTSKAGIHRK 65



 Score = 20.2 bits (40), Expect = 4.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 145 KHRRDWENIVVTGKTSS*LGKHRR 74
           K +R W     + +T+S  G HR+
Sbjct: 42  KRKRSWSRPRESAQTTSKAGIHRK 65



 Score = 20.2 bits (40), Expect = 4.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 125 KHRRDWENIVVTGKTSS*LGKHRR 54
           K +R W     + +T+S  G HR+
Sbjct: 42  KRKRSWSRPRESAQTTSKAGIHRK 65



 Score = 20.2 bits (40), Expect = 4.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 105 KHRRDWENIVVTGKTSS*LGKHRR 34
           K +R W     + +T+S  G HR+
Sbjct: 42  KRKRSWSRPRESAQTTSKAGIHRK 65



 Score = 20.2 bits (40), Expect = 4.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 85  KHRRDWENIVVTGKTSS*LGKHRR 14
           K +R W     + +T+S  G HR+
Sbjct: 42  KRKRSWSRPRESAQTTSKAGIHRK 65


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 8   PVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRC 103
           PV TM+        S +D    T+  S  R+C
Sbjct: 560 PVATMYGSDEEIINSSNDEGGKTSPNSAVRKC 591



 Score = 20.2 bits (40), Expect = 4.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 28  PVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRC 123
           PV TM+        S +D    T+  S  R+C
Sbjct: 560 PVATMYGSDEEIINSSNDEGGKTSPNSAVRKC 591



 Score = 20.2 bits (40), Expect = 4.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 48  PVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRC 143
           PV TM+        S +D    T+  S  R+C
Sbjct: 560 PVATMYGSDEEIINSSNDEGGKTSPNSAVRKC 591



 Score = 20.2 bits (40), Expect = 4.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 68  PVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRC 163
           PV TM+        S +D    T+  S  R+C
Sbjct: 560 PVATMYGSDEEIINSSNDEGGKTSPNSAVRKC 591



 Score = 20.2 bits (40), Expect = 4.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 88  PVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRC 183
           PV TM+        S +D    T+  S  R+C
Sbjct: 560 PVATMYGSDEEIINSSNDEGGKTSPNSAVRKC 591



 Score = 20.2 bits (40), Expect = 4.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 108 PVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRC 203
           PV TM+        S +D    T+  S  R+C
Sbjct: 560 PVATMYGSDEEIINSSNDEGGKTSPNSAVRKC 591



 Score = 20.2 bits (40), Expect = 4.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 128 PVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRC 223
           PV TM+        S +D    T+  S  R+C
Sbjct: 560 PVATMYGSDEEIINSSNDEGGKTSPNSAVRKC 591



 Score = 20.2 bits (40), Expect = 4.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 148 PVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRC 243
           PV TM+        S +D    T+  S  R+C
Sbjct: 560 PVATMYGSDEEIINSSNDEGGKTSPNSAVRKC 591


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 18  RCFPSHDDVFPVTTM 62
           RC+P +DD    T +
Sbjct: 459 RCYPRYDDATNATVI 473



 Score = 19.8 bits (39), Expect = 5.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 38  RCFPSHDDVFPVTTM 82
           RC+P +DD    T +
Sbjct: 459 RCYPRYDDATNATVI 473



 Score = 19.8 bits (39), Expect = 5.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +1

Query: 58  RCFPSHDDVFPVTTM 102
           RC+P +DD    T +
Sbjct: 459 RCYPRYDDATNATVI 473



 Score = 19.8 bits (39), Expect = 5.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 78  RCFPSHDDVFPVTTM 122
           RC+P +DD    T +
Sbjct: 459 RCYPRYDDATNATVI 473



 Score = 19.8 bits (39), Expect = 5.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 98  RCFPSHDDVFPVTTM 142
           RC+P +DD    T +
Sbjct: 459 RCYPRYDDATNATVI 473



 Score = 19.8 bits (39), Expect = 5.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +1

Query: 118 RCFPSHDDVFPVTTM 162
           RC+P +DD    T +
Sbjct: 459 RCYPRYDDATNATVI 473



 Score = 19.8 bits (39), Expect = 5.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 138 RCFPSHDDVFPVTTM 182
           RC+P +DD    T +
Sbjct: 459 RCYPRYDDATNATVI 473



 Score = 19.8 bits (39), Expect = 5.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 158 RCFPSHDDVFPVTTM 202
           RC+P +DD    T +
Sbjct: 459 RCYPRYDDATNATVI 473



 Score = 19.8 bits (39), Expect = 5.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +1

Query: 178 RCFPSHDDVFPVTTM 222
           RC+P +DD    T +
Sbjct: 459 RCYPRYDDATNATVI 473



 Score = 19.8 bits (39), Expect = 5.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 198 RCFPSHDDVFPVTTM 242
           RC+P +DD    T +
Sbjct: 459 RCYPRYDDATNATVI 473


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 245 KHRRDWENIVVTGKTSS*LGKHRR 174
           K +R W       +T+S  G HR+
Sbjct: 163 KRKRSWSRPREPAQTTSKAGIHRK 186



 Score = 19.4 bits (38), Expect = 7.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 225 KHRRDWENIVVTGKTSS*LGKHRR 154
           K +R W       +T+S  G HR+
Sbjct: 163 KRKRSWSRPREPAQTTSKAGIHRK 186



 Score = 19.4 bits (38), Expect = 7.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 205 KHRRDWENIVVTGKTSS*LGKHRR 134
           K +R W       +T+S  G HR+
Sbjct: 163 KRKRSWSRPREPAQTTSKAGIHRK 186



 Score = 19.4 bits (38), Expect = 7.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 185 KHRRDWENIVVTGKTSS*LGKHRR 114
           K +R W       +T+S  G HR+
Sbjct: 163 KRKRSWSRPREPAQTTSKAGIHRK 186



 Score = 19.4 bits (38), Expect = 7.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 165 KHRRDWENIVVTGKTSS*LGKHRR 94
           K +R W       +T+S  G HR+
Sbjct: 163 KRKRSWSRPREPAQTTSKAGIHRK 186



 Score = 19.4 bits (38), Expect = 7.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 145 KHRRDWENIVVTGKTSS*LGKHRR 74
           K +R W       +T+S  G HR+
Sbjct: 163 KRKRSWSRPREPAQTTSKAGIHRK 186



 Score = 19.4 bits (38), Expect = 7.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 125 KHRRDWENIVVTGKTSS*LGKHRR 54
           K +R W       +T+S  G HR+
Sbjct: 163 KRKRSWSRPREPAQTTSKAGIHRK 186



 Score = 19.4 bits (38), Expect = 7.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 105 KHRRDWENIVVTGKTSS*LGKHRR 34
           K +R W       +T+S  G HR+
Sbjct: 163 KRKRSWSRPREPAQTTSKAGIHRK 186



 Score = 19.4 bits (38), Expect = 7.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 85  KHRRDWENIVVTGKTSS*LGKHRR 14
           K +R W       +T+S  G HR+
Sbjct: 163 KRKRSWSRPREPAQTTSKAGIHRK 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,781
Number of Sequences: 438
Number of extensions: 2343
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4887441
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)