Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1105
(264 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g63370.1 68414.m07164 flavin-containing monooxygenase family ... 27 1.7
At5g01890.1 68418.m00108 leucine-rich repeat transmembrane prote... 27 2.3
At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel... 26 3.9
>At1g63370.1 68414.m07164 flavin-containing monooxygenase family
protein / FMO family protein similar to FMO5 from Cavia
porcellus [SP|P49109]; contains Pfam profile: PF00743
Flavin-binding monooxygenase-like
Length = 450
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 12 SRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQ 131
+R C D F V + S+ RR FPSH +V F++
Sbjct: 82 TRECTGYRDFPFVVRSGVSRDRRRFPSHGEVLAYLKDFAK 121
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 32 SRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQ 151
+R C D F V + S+ RR FPSH +V F++
Sbjct: 82 TRECTGYRDFPFVVRSGVSRDRRRFPSHGEVLAYLKDFAK 121
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 52 SRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQ 171
+R C D F V + S+ RR FPSH +V F++
Sbjct: 82 TRECTGYRDFPFVVRSGVSRDRRRFPSHGEVLAYLKDFAK 121
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 72 SRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQ 191
+R C D F V + S+ RR FPSH +V F++
Sbjct: 82 TRECTGYRDFPFVVRSGVSRDRRRFPSHGEVLAYLKDFAK 121
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 92 SRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQ 211
+R C D F V + S+ RR FPSH +V F++
Sbjct: 82 TRECTGYRDFPFVVRSGVSRDRRRFPSHGEVLAYLKDFAK 121
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 112 SRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQ 231
+R C D F V + S+ RR FPSH +V F++
Sbjct: 82 TRECTGYRDFPFVVRSGVSRDRRRFPSHGEVLAYLKDFAK 121
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 132 SRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQ 251
+R C D F V + S+ RR FPSH +V F++
Sbjct: 82 TRECTGYRDFPFVVRSGVSRDRRRFPSHGEVLAYLKDFAK 121
>At5g01890.1 68418.m00108 leucine-rich repeat transmembrane protein
kinase, putative leucine-rich receptor-like protein
(LRPKm1) - Malus domestica, EMBL:AF053127
Length = 967
Score = 26.6 bits (56), Expect = 2.3
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +3
Query: 102 VFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSDDV 263
V VT + +R HD + ++ C PS D F MFS DV
Sbjct: 624 VVAVTLLNVHARSSVSRHDAAAALALSVGETFSCSPSKDQEFGKLVMFSGEVDV 677
Score = 24.6 bits (51), Expect = 9.1
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = +2
Query: 2 VFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFS 148
V VT + +R HD + ++ C PS D F MFS
Sbjct: 624 VVAVTLLNVHARSSVSRHDAAAALALSVGETFSCSPSKDQEFGKLVMFS 672
Score = 24.6 bits (51), Expect = 9.1
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = +1
Query: 22 VFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFS 168
V VT + +R HD + ++ C PS D F MFS
Sbjct: 624 VVAVTLLNVHARSSVSRHDAAAALALSVGETFSCSPSKDQEFGKLVMFS 672
Score = 24.6 bits (51), Expect = 9.1
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = +3
Query: 42 VFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFS 188
V VT + +R HD + ++ C PS D F MFS
Sbjct: 624 VVAVTLLNVHARSSVSRHDAAAALALSVGETFSCSPSKDQEFGKLVMFS 672
Score = 24.6 bits (51), Expect = 9.1
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = +2
Query: 62 VFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFS 208
V VT + +R HD + ++ C PS D F MFS
Sbjct: 624 VVAVTLLNVHARSSVSRHDAAAALALSVGETFSCSPSKDQEFGKLVMFS 672
Score = 24.6 bits (51), Expect = 9.1
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = +1
Query: 82 VFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFS 228
V VT + +R HD + ++ C PS D F MFS
Sbjct: 624 VVAVTLLNVHARSSVSRHDAAAALALSVGETFSCSPSKDQEFGKLVMFS 672
>At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel
(CNGC10) (ACBK1) almost identical to CaM-regulated
potassium ion channel (ACBK1) GI:8515883 from
[Arabidopsis thaliana]; contains Pfam domain, PF00520:
Ion transport protein
Length = 706
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 4 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDD 141
F D+ P+++ + R+ PS D VF + FPSH D
Sbjct: 4 FRFKDEGKPLSSEYGYGRKARPSLDRVFKNVKWGFKKPLSFPSHKD 49
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 24 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDD 161
F D+ P+++ + R+ PS D VF + FPSH D
Sbjct: 4 FRFKDEGKPLSSEYGYGRKARPSLDRVFKNVKWGFKKPLSFPSHKD 49
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 44 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDD 181
F D+ P+++ + R+ PS D VF + FPSH D
Sbjct: 4 FRFKDEGKPLSSEYGYGRKARPSLDRVFKNVKWGFKKPLSFPSHKD 49
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 64 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDD 201
F D+ P+++ + R+ PS D VF + FPSH D
Sbjct: 4 FRFKDEGKPLSSEYGYGRKARPSLDRVFKNVKWGFKKPLSFPSHKD 49
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 84 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDD 221
F D+ P+++ + R+ PS D VF + FPSH D
Sbjct: 4 FRFKDEGKPLSSEYGYGRKARPSLDRVFKNVKWGFKKPLSFPSHKD 49
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 104 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDD 241
F D+ P+++ + R+ PS D VF + FPSH D
Sbjct: 4 FRFKDEGKPLSSEYGYGRKARPSLDRVFKNVKWGFKKPLSFPSHKD 49
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,998,843
Number of Sequences: 28952
Number of extensions: 138560
Number of successful extensions: 519
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,070,560
effective HSP length: 66
effective length of database: 10,159,728
effective search space used: 213354288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -