Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1104
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    31   0.24 
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    27   2.3  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    27   3.0  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   7.0  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    25   9.2  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.2  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   9.2  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +1

Query: 229 ASEVVNFDDLDNFCRSHGQVPATHLSNVCLINFRW*F---LRLPWLSRVTGNQGSIPERE 399
           + E+++F +        G   +  L   C+IN  W     LRL +L +   NQ S  E++
Sbjct: 243 SKEIIDFLEKSKTLVELGMDSSCSLVAECMINETWPVDRALRLQFLIQQRNNQSSNEEQK 302

Query: 400 PEKRLP 417
            EKR+P
Sbjct: 303 QEKRVP 308


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 438 RANYPLPAREVVTKNNDT 491
           +AN P+P  EVVT+NN T
Sbjct: 199 KANIPVPTSEVVTENNVT 216


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 289 VLDHAICKSYPDHQN*RLRTRGPPSIGFDLIKALIP 182
           ++D    K Y  H +  L  +  PS GF +I++L+P
Sbjct: 391 LIDQGYIKGYIIHASSTLVLKKDPSFGFSVIESLMP 426


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 426 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 328
           P MW      P  N+ +   YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 424 LDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 323
           L ++  S+   P + PD P   T+  V+ TT+E+
Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVEA 455


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 738 NRRFLERRLTDDMSANVSVSPR-MRCTDSAAHKCNYELFNRNNFSIRYWSWNYR 580
           NR  +  RL     ++ S + R +R    AA KC +E      FSI + S+N++
Sbjct: 44  NRILIAVRLFSFAFSSFSTTLRILRDFIIAASKCEFEKIWSTTFSISFLSFNFK 97


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 473 HYLPCREWVICAPA 432
           HY+PC+ W++  P+
Sbjct: 455 HYIPCQSWLVWYPS 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,127,716
Number of Sequences: 5004
Number of extensions: 62349
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)