Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1104
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    23   4.2  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    23   4.2  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    23   4.2  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    23   4.2  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    23   4.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   4.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   4.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   7.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   7.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.7  

>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -3

Query: 735 RRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 583
           R+  + R  D      S  P++    S ++  NY  +N NN+    ++ NY
Sbjct: 60  RKTSKERSRDRTERERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -3

Query: 735 RRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 583
           R+  + R  D      S  P++    S ++  NY  +N NN+    ++ NY
Sbjct: 60  RKTSKERSRDRTERERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -3

Query: 735 RRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 583
           R+  + R  D      S  P++    S ++  NY  +N NN+    ++ NY
Sbjct: 60  RKTSKERSRDRTERERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -3

Query: 735 RRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 583
           R+  + R  D      S  P++    S ++  NY  +N NN+    ++ NY
Sbjct: 60  RKTSKERSRDRTERERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -3

Query: 735 RRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 583
           R+  + R  D      S  P++    S ++  NY  +N NN+    ++ NY
Sbjct: 60  RKTSKERSRDRTERERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 42  MSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLT 176
           M  C P   DT    +Y+F   R Y +   T VI  +   + TLT
Sbjct: 230 MYACCP--NDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLT 272


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 457 RHGR**RKITIRDSYEACNRNEYTLNI 537
           +H R  R  T+ +SY+A + N  +L++
Sbjct: 29  KHSRRHRDFTVAESYDASSSNSDSLSM 55


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 14  YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 127
           Y C  +    +     LRR   +  ++++VP + +SYL
Sbjct: 215 YPCCDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYL 252


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 19/80 (23%), Positives = 29/80 (36%)
 Frame = -2

Query: 502 RKSPVSLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 323
           R S  +    TTS  GSG          V  V  + S   N D+ L +   +   ++++ 
Sbjct: 222 RPSYTTATMATTSTPGSGSLPASPADSGVSDVESSTSSGGNEDANLLLKARLNPNSSLQP 281

Query: 322 **GRHLKDASPVLDHAICKS 263
               H    S  L  + C S
Sbjct: 282 SLASHHSHLSSALGRSACHS 301


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = -3

Query: 765 RHRDRILILNRRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWN 586
           R RDR      R  E ++   +S N ++       ++  +  NY   N NN+   Y++ N
Sbjct: 66  RSRDRTE--RERSREPKIISSLS-NKTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNIN 122

Query: 585 Y 583
           Y
Sbjct: 123 Y 123


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/38 (18%), Positives = 21/38 (55%)
 Frame = +2

Query: 14  YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 127
           Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 224 YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/38 (18%), Positives = 21/38 (55%)
 Frame = +2

Query: 14  YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 127
           Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 224 YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 711 TDDMSANVSVSPRMRCTDSAAHKCNYELF 625
           T DM+  +S  P+    ++A    N E+F
Sbjct: 465 TKDMNLEISTRPKSNTVENACVLKNTEIF 493


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 428  RQQARKLPTPGTGGSDE 478
            R+Q RK  TPG   SDE
Sbjct: 1768 RRQQRKQQTPGDVESDE 1784


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 428  RQQARKLPTPGTGGSDE 478
            R+Q RK  TPG   SDE
Sbjct: 1764 RRQQRKQQTPGDVESDE 1780


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = -3

Query: 765 RHRDRILILNRRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWN 586
           R RDR      R  E ++   +S N   S      ++  +  NY     NN+   Y++ N
Sbjct: 299 RSRDRTE--RERSKEPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNIN 356

Query: 585 Y 583
           Y
Sbjct: 357 Y 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,675
Number of Sequences: 438
Number of extensions: 4959
Number of successful extensions: 23
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)