Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1100
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 151 8e-37
03_01_0547 + 4093196-4093657,4094267-4095148 151 8e-37
03_01_0544 + 4082528-4082989,4083585-4084466 151 8e-37
03_01_0543 + 4076981-4077442,4078145-4079026 151 8e-37
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 49 5e-06
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 46 4e-05
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 46 4e-05
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 38 0.009
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 38 0.009
02_04_0462 + 23131433-23132836 37 0.020
05_07_0055 - 27374028-27374080,27374205-27374295,27374930-273754... 33 0.25
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 33 0.33
06_03_1165 - 28106604-28106915 31 1.3
11_06_0516 + 24502645-24504507 29 4.1
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 5.4
02_05_0879 - 32444967-32445250,32445643-32445674,32445752-324458... 28 7.2
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 28 9.5
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 151 bits (365), Expect = 8e-37
Identities = 66/83 (79%), Positives = 77/83 (92%)
Frame = -2
Query: 760 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIV 581
TEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI+
Sbjct: 275 TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVII 334
Query: 580 LNHPGQISNGYTPVLDCHTAHIA 512
+NHPGQI NGY PVLDCHT+HIA
Sbjct: 335 MNHPGQIGNGYAPVLDCHTSHIA 357
Score = 114 bits (274), Expect = 8e-26
Identities = 53/89 (59%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Frame = -1
Query: 527 HCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 351
H H ++FAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGR 411
Query: 350 FAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
FAVRDMRQTVAVGVIK V K+ G KVT
Sbjct: 412 FAVRDMRQTVAVGVIKNVEKKDPTGAKVT 440
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 151 bits (365), Expect = 8e-37
Identities = 66/83 (79%), Positives = 77/83 (92%)
Frame = -2
Query: 760 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIV 581
TEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI+
Sbjct: 275 TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVII 334
Query: 580 LNHPGQISNGYTPVLDCHTAHIA 512
+NHPGQI NGY PVLDCHT+HIA
Sbjct: 335 MNHPGQIGNGYAPVLDCHTSHIA 357
Score = 114 bits (274), Expect = 8e-26
Identities = 53/89 (59%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Frame = -1
Query: 527 HCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 351
H H ++FAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGR 411
Query: 350 FAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
FAVRDMRQTVAVGVIK V K+ G KVT
Sbjct: 412 FAVRDMRQTVAVGVIKNVEKKDPTGAKVT 440
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 151 bits (365), Expect = 8e-37
Identities = 66/83 (79%), Positives = 77/83 (92%)
Frame = -2
Query: 760 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIV 581
TEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI+
Sbjct: 275 TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVII 334
Query: 580 LNHPGQISNGYTPVLDCHTAHIA 512
+NHPGQI NGY PVLDCHT+HIA
Sbjct: 335 MNHPGQIGNGYAPVLDCHTSHIA 357
Score = 114 bits (274), Expect = 8e-26
Identities = 53/89 (59%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Frame = -1
Query: 527 HCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 351
H H ++FAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGR 411
Query: 350 FAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
FAVRDMRQTVAVGVIK V K+ G KVT
Sbjct: 412 FAVRDMRQTVAVGVIKNVEKKDPTGAKVT 440
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 151 bits (365), Expect = 8e-37
Identities = 66/83 (79%), Positives = 77/83 (92%)
Frame = -2
Query: 760 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIV 581
TEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI+
Sbjct: 275 TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVII 334
Query: 580 LNHPGQISNGYTPVLDCHTAHIA 512
+NHPGQI NGY PVLDCHT+HIA
Sbjct: 335 MNHPGQIGNGYAPVLDCHTSHIA 357
Score = 114 bits (274), Expect = 8e-26
Identities = 53/89 (59%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Frame = -1
Query: 527 HCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 351
H H ++FAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGR 411
Query: 350 FAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
FAVRDMRQTVAVGVIK V K+ G KVT
Sbjct: 412 FAVRDMRQTVAVGVIKNVEKKDPTGAKVT 440
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 48.8 bits (111), Expect = 5e-06
Identities = 21/68 (30%), Positives = 39/68 (57%)
Frame = -1
Query: 500 EIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTV 321
+I ++++TGK+++ P+ + S A++ + K +CVE F LGR +R T+
Sbjct: 583 KILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLRSQGNTI 642
Query: 320 AVGVIKAV 297
AVG++ V
Sbjct: 643 AVGIVSRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = -1
Query: 527 HCPHCLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 348
H + +I +D+ GK ++ P+ +KS A+V + P+CV+ F + LGR
Sbjct: 599 HVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRA 657
Query: 347 AVRDMRQTVAVGVI 306
+R T+AVGV+
Sbjct: 658 FLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = -1
Query: 527 HCPHCLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 348
H + +I +D+ GK ++ P+ +KS A+V + P+CV+ F + LGR
Sbjct: 599 HVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRA 657
Query: 347 AVRDMRQTVAVGVI 306
+R T+AVGV+
Sbjct: 658 FLRSSGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 37.9 bits (84), Expect = 0.009
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = -1
Query: 494 KEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 339
K++ D + K + P +K+G + + + +C+E+F +FP LGRF +R
Sbjct: 365 KKEADPKK-KKPKRKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLGRFTLR 415
Score = 31.9 bits (69), Expect = 0.58
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = -2
Query: 757 EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVL 578
+V + + ++ A P +NV + + +++ G+V S NP +F AQ+ +L
Sbjct: 268 KVIGISLDEHKVRRAGPAENVRVKLSGIEDEDIMAGFVL-SSIGNPVGAVTEFNAQLQIL 326
Query: 577 N--HPGQISNGYTPVLDCHTAHIAC 509
+ GY VL H+ C
Sbjct: 327 ELLDNAIFTAGYKAVLHIHSVVEEC 351
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 37.9 bits (84), Expect = 0.009
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = -2
Query: 757 EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVL 578
+V SV + ++ A PG+NV + + ++ G+V K NP ++F AQ+ +L
Sbjct: 223 KVISVHCDEDRVRSAAPGENVRVKLSGIEEDDITAGFVLSSIK-NPVSAISEFRAQLQIL 281
Query: 577 N--HPGQISNGYTPVLDCHTAHIAC 509
+ GY VL H+ C
Sbjct: 282 ELLDNAIFTAGYKAVLHIHSVVEEC 306
>02_04_0462 + 23131433-23132836
Length = 467
Score = 36.7 bits (81), Expect = 0.020
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Frame = -2
Query: 754 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 575
V VEM + + +A+ GDNVG ++ + ++ RG V + P D V+ +
Sbjct: 324 VTGVEMFQKTMDDAMAGDNVGLLLRGMQKDDIERGMVLAKPASITPHTKFDAVVYVLKKD 383
Query: 574 HPGQIS---NGYTPVLDCHTAHIACN 506
G+ S GY P T + N
Sbjct: 384 EGGRHSPFFPGYRPQFYMRTTDVTGN 409
>05_07_0055 -
27374028-27374080,27374205-27374295,27374930-27375448,
27375544-27375779,27376363-27376846,27376993-27378282
Length = 890
Score = 33.1 bits (72), Expect = 0.25
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -3
Query: 654 VVMLLVTPKTTHLRVLQILQLKSLCLTILVK-SQTVTHQSWIATLPTLPAICRNQRK 487
V ML V P+ H +V QIL K L + ++ + + W LPA CRN RK
Sbjct: 387 VAMLSVLPQE-HTQVDQILSFKFLVDNVPIRLNDGIILTGWSGITEALPAKCRNDRK 442
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 32.7 bits (71), Expect = 0.33
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Frame = -2
Query: 760 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIV 581
T V VEM + L GDNVG ++ + +++RG V K K F A++ V
Sbjct: 313 TTVTGVEMFKKILDHGEAGDNVGLLLRGLKRGDVQRGQVV--CKPGTVKTYQKFEAEIYV 370
Query: 580 L------NHPGQISNGYTPVLDCHTAHI 515
L H +SN Y+P TA +
Sbjct: 371 LTKDEGGRHTAFLSN-YSPQFYFRTADV 397
>06_03_1165 - 28106604-28106915
Length = 103
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -1
Query: 770 PTSY*SQVCGDAPRSSPRSCTWRQCRFQRKERVRQGIASWLCCW 639
P S SQ G A SSP + R R +R E + A L CW
Sbjct: 57 PVSLSSQTGGAAASSSPAAACGRAARSKRSEEEKMQKAYHLVCW 100
>11_06_0516 + 24502645-24504507
Length = 620
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = -2
Query: 745 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 566
VE HEAL AV D V S++E+ R GD + PP + V++ G
Sbjct: 114 VEQVHEALL-AVDAD---IEVIKASIREVYRFPCDGDERRGPPPPSTAPATGVVMTRRMG 169
Query: 565 QISNG 551
+I G
Sbjct: 170 EIRRG 174
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 88 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 168
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>02_05_0879 -
32444967-32445250,32445643-32445674,32445752-32445809,
32445840-32445913,32446004-32446088,32447054-32447735
Length = 404
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 418 MAASPDLMDFGLTSVDLPVRRSTFSLISANCRQCGQC--GNPRLVC 549
+AA D++ L L V T++L + NC QC C GN L C
Sbjct: 215 IAAPGDILAIPLPDHGLIVANGTYALTAGNCVQC-SCGPGNLNLYC 259
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +1
Query: 301 ALMTPTATVCLMSRTAKRPRGGNSWKDSTHRGLEGTKLTMAASPDLMDFGLTSVDLPVRR 480
A+ P TV + T ++ RG K +GL G KLT S L LT ++ +R
Sbjct: 282 AIAYPMPTVNPVESTPRKGRGRPRKKPVEIKGLSGIKLTEDLSTALSPIALTCMEPKKKR 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,217,695
Number of Sequences: 37544
Number of extensions: 443982
Number of successful extensions: 1224
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -