Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1100
(770 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 151 7e-37
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 151 7e-37
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 151 7e-37
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 50 2e-06
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 41 0.001
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 38 0.006
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 30 2.1
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 30 2.1
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 30 2.1
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 3.7
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 29 4.8
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 8.5
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 151 bits (365), Expect = 7e-37
Identities = 68/84 (80%), Positives = 74/84 (88%)
Frame = -2
Query: 760 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIV 581
TEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI+
Sbjct: 253 TEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVII 312
Query: 580 LNHPGQISNGYTPVLDCHTAHIAC 509
+NHPGQISNGYTPVLDCHTAHIAC
Sbjct: 313 MNHPGQISNGYTPVLDCHTAHIAC 336
Score = 122 bits (293), Expect = 4e-28
Identities = 59/89 (66%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Frame = -1
Query: 527 HCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 351
H H +F E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGR
Sbjct: 330 HTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGR 389
Query: 350 FAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
FAVRDMRQTVAVGVIK+V + GKVT
Sbjct: 390 FAVRDMRQTVAVGVIKSVEKSDGSSGKVT 418
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 151 bits (365), Expect = 7e-37
Identities = 68/84 (80%), Positives = 74/84 (88%)
Frame = -2
Query: 760 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIV 581
TEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI+
Sbjct: 287 TEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVII 346
Query: 580 LNHPGQISNGYTPVLDCHTAHIAC 509
+NHPGQISNGYTPVLDCHTAHIAC
Sbjct: 347 MNHPGQISNGYTPVLDCHTAHIAC 370
Score = 122 bits (293), Expect = 4e-28
Identities = 59/89 (66%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Frame = -1
Query: 527 HCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 351
H H +F E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGR
Sbjct: 364 HTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGR 423
Query: 350 FAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
FAVRDMRQTVAVGVIK+V + GKVT
Sbjct: 424 FAVRDMRQTVAVGVIKSVEKSDGSSGKVT 452
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 151 bits (365), Expect = 7e-37
Identities = 68/84 (80%), Positives = 74/84 (88%)
Frame = -2
Query: 760 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIV 581
TEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI+
Sbjct: 287 TEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVII 346
Query: 580 LNHPGQISNGYTPVLDCHTAHIAC 509
+NHPGQISNGYTPVLDCHTAHIAC
Sbjct: 347 MNHPGQISNGYTPVLDCHTAHIAC 370
Score = 122 bits (293), Expect = 4e-28
Identities = 59/89 (66%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Frame = -1
Query: 527 HCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 351
H H +F E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGR
Sbjct: 364 HTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGR 423
Query: 350 FAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
FAVRDMRQTVAVGVIK+V + GKVT
Sbjct: 424 FAVRDMRQTVAVGVIKSVEKSDGSSGKVT 452
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = -1
Query: 485 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 309
+D++TG+ K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527
Query: 308 IKAV 297
+K V
Sbjct: 528 LKVV 531
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/83 (30%), Positives = 43/83 (51%)
Frame = -2
Query: 769 QHPTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQ 590
+ P +V + + V GDN+ F +K + EL+ G++ S ++ K F A+
Sbjct: 376 KQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFII-CSPDSLAKTGRVFDAE 434
Query: 589 VIVLNHPGQISNGYTPVLDCHTA 521
V+VL H I++GY+ VL +A
Sbjct: 435 VLVLEHRSIIASGYSCVLHIQSA 457
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/76 (28%), Positives = 36/76 (47%)
Frame = -2
Query: 763 PTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVI 584
P +KS+ + G + F +K + K++R+G V D K P F A+++
Sbjct: 417 PIPIKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEIL 475
Query: 583 VLNHPGQISNGYTPVL 536
VL+HP I Y +L
Sbjct: 476 VLHHPTTIKPNYQAML 491
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/76 (25%), Positives = 36/76 (47%)
Frame = -1
Query: 524 CPHCLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFA 345
C C F + +++ G+ + P+ I G +A+V + + +E+F LGR
Sbjct: 514 CVPCT-FTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVT 572
Query: 344 VRDMRQTVAVGVIKAV 297
R T+A G+++ V
Sbjct: 573 FRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/76 (25%), Positives = 36/76 (47%)
Frame = -1
Query: 524 CPHCLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFA 345
C C F + +++ G+ + P+ I G +A+V + + +E+F LGR
Sbjct: 532 CVPCT-FTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVT 590
Query: 344 VRDMRQTVAVGVIKAV 297
R T+A G+++ V
Sbjct: 591 FRAGGNTIAAGIVEKV 606
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = -2
Query: 754 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 575
+ +E + + +A PGD +G ++ + K++RRG V + + K AQ+ VL
Sbjct: 300 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLK 358
Query: 574 HPGQISNGYTPVLDCHTAHI 515
TP+ + + H+
Sbjct: 359 E--SEGGAKTPIANYFSEHV 376
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = -2
Query: 754 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 575
+ +E + + +A PGD +G ++ + K++RRG V + + K AQ+ VL
Sbjct: 301 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLK 359
Query: 574 HPGQISNGYTPVLDCHTAHI 515
TP+ + + H+
Sbjct: 360 E--SEGGAKTPIANYFSEHV 377
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = -2
Query: 754 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 575
+ +E + + +A PGD +G ++ + K++RRG V + + K AQ+ VL
Sbjct: 301 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLK 359
Query: 574 HPGQISNGYTPVLDCHTAHI 515
TP+ + + H+
Sbjct: 360 E--SEGGAKTPIANYFSEHV 377
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 157 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 50
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -2
Query: 754 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 575
V S+ +A+ PG+ ++ LRRG V + + PP +FTA +++L
Sbjct: 450 VGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLC 508
Query: 574 H 572
H
Sbjct: 509 H 509
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 588 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 719
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,086,555
Number of Sequences: 27780
Number of extensions: 386873
Number of successful extensions: 1121
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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