Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1100
(770 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 150 9e-37
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 150 9e-37
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 150 9e-37
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 150 9e-37
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 101 7e-22
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 54 1e-07
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 48 9e-06
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 35 0.052
At4g27900.2 68417.m04005 expressed protein 32 0.48
At4g27900.1 68417.m04004 expressed protein 32 0.48
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 32 0.48
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 29 4.5
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila... 29 4.5
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 29 4.5
At5g07670.1 68418.m00878 F-box family protein similar to unknown... 28 7.9
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 28 7.9
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 150 bits (364), Expect = 9e-37
Identities = 65/83 (78%), Positives = 78/83 (93%)
Frame = -2
Query: 760 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIV 581
TEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI+
Sbjct: 275 TEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVII 334
Query: 580 LNHPGQISNGYTPVLDCHTAHIA 512
+NHPGQI NGY PVLDCHT+HIA
Sbjct: 335 MNHPGQIGNGYAPVLDCHTSHIA 357
Score = 114 bits (274), Expect = 7e-26
Identities = 53/89 (59%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
Frame = -1
Query: 527 HCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 351
H H ++F+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGR 411
Query: 350 FAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
FAVRDMRQTVAVGVIK+V+ K+ G KVT
Sbjct: 412 FAVRDMRQTVAVGVIKSVDKKDPTGAKVT 440
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 150 bits (364), Expect = 9e-37
Identities = 65/83 (78%), Positives = 78/83 (93%)
Frame = -2
Query: 760 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIV 581
TEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI+
Sbjct: 275 TEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVII 334
Query: 580 LNHPGQISNGYTPVLDCHTAHIA 512
+NHPGQI NGY PVLDCHT+HIA
Sbjct: 335 MNHPGQIGNGYAPVLDCHTSHIA 357
Score = 114 bits (274), Expect = 7e-26
Identities = 53/89 (59%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
Frame = -1
Query: 527 HCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 351
H H ++F+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGR 411
Query: 350 FAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
FAVRDMRQTVAVGVIK+V+ K+ G KVT
Sbjct: 412 FAVRDMRQTVAVGVIKSVDKKDPTGAKVT 440
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 150 bits (364), Expect = 9e-37
Identities = 65/83 (78%), Positives = 78/83 (93%)
Frame = -2
Query: 760 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIV 581
TEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI+
Sbjct: 275 TEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVII 334
Query: 580 LNHPGQISNGYTPVLDCHTAHIA 512
+NHPGQI NGY PVLDCHT+HIA
Sbjct: 335 MNHPGQIGNGYAPVLDCHTSHIA 357
Score = 114 bits (274), Expect = 7e-26
Identities = 53/89 (59%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
Frame = -1
Query: 527 HCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 351
H H ++F+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGR 411
Query: 350 FAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
FAVRDMRQTVAVGVIK+V+ K+ G KVT
Sbjct: 412 FAVRDMRQTVAVGVIKSVDKKDPTGAKVT 440
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 150 bits (364), Expect = 9e-37
Identities = 65/83 (78%), Positives = 78/83 (93%)
Frame = -2
Query: 760 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIV 581
TEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI+
Sbjct: 275 TEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVII 334
Query: 580 LNHPGQISNGYTPVLDCHTAHIA 512
+NHPGQI NGY PVLDCHT+HIA
Sbjct: 335 MNHPGQIGNGYAPVLDCHTSHIA 357
Score = 114 bits (274), Expect = 7e-26
Identities = 53/89 (59%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
Frame = -1
Query: 527 HCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 351
H H ++F+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGR 411
Query: 350 FAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
FAVRDMRQTVAVGVIK+V+ K+ G KVT
Sbjct: 412 FAVRDMRQTVAVGVIKSVDKKDPTGAKVT 440
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 101 bits (241), Expect = 7e-22
Identities = 46/87 (52%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Frame = -1
Query: 527 HCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 351
H H ++F+EI K+D RTG E PK +K+ +AAI+N+ P+KP+ VE++ +PPLGR
Sbjct: 18 HTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTPTKPMVVEAYSAYPPLGR 77
Query: 350 FAVRDMRQTVAVGVIKAVNFKEAGGGK 270
FA+RDMRQTV VGVIK+V K+ G K
Sbjct: 78 FAIRDMRQTVGVGVIKSVVKKDPSGAK 104
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -2
Query: 580 LNHPGQISNGYTPVLDCHTAHIA 512
+NH GQI NGYTPVLDCHT+HIA
Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIA 23
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 54.0 bits (124), Expect = 1e-07
Identities = 22/68 (32%), Positives = 40/68 (58%)
Frame = -1
Query: 509 QFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMR 330
+ E+K ++D +T K + +K+G A + + + +C+E F +FP LGRF +R
Sbjct: 455 EIIELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTEG 514
Query: 329 QTVAVGVI 306
+T+AVG +
Sbjct: 515 KTIAVGKV 522
Score = 31.1 bits (67), Expect = 0.84
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = -2
Query: 757 EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVL 578
+V ++ + ++ A PG+N+ + + +++ G+V S NP +F AQ+ +L
Sbjct: 371 KVVAIYCDEDKVKRAGPGENLRVRITGIEDEDILSGFVL-SSIVNPVPAVTEFVAQLQIL 429
Query: 577 N--HPGQISNGYTPVLDCHTAHIAC 509
+ GY +L H C
Sbjct: 430 ELLDNAIFTAGYKAILHIHAVVEEC 454
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 47.6 bits (108), Expect = 9e-06
Identities = 21/77 (27%), Positives = 42/77 (54%)
Frame = -1
Query: 527 HCPHCLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 348
H ++ +D +TG+ T+ +P+ + + +A++ + P+CVE+F E LGR
Sbjct: 587 HAKEAATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSESRALGRV 646
Query: 347 AVRDMRQTVAVGVIKAV 297
+R +TVA+G + +
Sbjct: 647 FLRSSGRTVAMGKVTRI 663
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 35.1 bits (77), Expect = 0.052
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = -2
Query: 754 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 575
V VEM + L EA+ GDNVG ++ + +++RG V + P + V+
Sbjct: 333 VTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGSITPHTKFEAIIYVLKKE 392
Query: 574 HPGQIS---NGYTPVLDCHTAHI 515
G+ S GY P T +
Sbjct: 393 EGGRHSPFFAGYRPQFYMRTTDV 415
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.48
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 449 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 357
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.48
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 449 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 357
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 31.9 bits (69), Expect = 0.48
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Frame = -2
Query: 754 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVL- 578
V VEM + L GDNVG ++ + ++++RG V +K K F A++ VL
Sbjct: 316 VTGVEMFKKILDNGQAGDNVGLLLRGLKREDIQRGMVI--AKPGSCKTYKKFEAEIYVLT 373
Query: 577 -----NHPGQISNGYTPVLDCHTAHI 515
H SN Y P TA I
Sbjct: 374 KDEGGRHTAFFSN-YRPQFYLRTADI 398
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 512 LQFAEIKEKVDRRTGKSTEVNPKSI 438
++F + KEK+DR GK E+N K +
Sbjct: 257 MRFPKPKEKIDREGGKPLEINVKKL 281
>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
to pre-mRNA splicing factor pre-mRNA splicing factor
prp1 (SP:Q12381) [Fission yeast]
Length = 1029
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 4/23 (17%)
Frame = -1
Query: 536 GLPHCPHC----LQFAEIKEKVD 480
GL HCPHC L A+++EKV+
Sbjct: 820 GLKHCPHCIPLWLSLADLEEKVN 842
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = -2
Query: 127 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 29
I+ K C+ V LFY ++ N S FCY C+L+C
Sbjct: 619 IYLKPCHIFKVGLFYKEVEIARNDGNSRLFCYICRLRC 656
>At5g07670.1 68418.m00878 F-box family protein similar to unknown
protein (pir||C71419) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 476
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Frame = +2
Query: 599 KICSTLRWVVF----GVTSNITTTQFLDGHV--LYVETYIVSRYSFLESFVVHLHRLDFS 760
K+C R +VF G+ ++I + G V LY+E + S LES ++H H L+
Sbjct: 360 KMCEAAREIVFQDCWGLDNDIFSLAMAFGRVKLLYLEGCSLLTTSGLESVILHWHELEHL 419
Query: 761 RML 769
+++
Sbjct: 420 KVV 422
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = -2
Query: 127 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 29
I+ K C+ V L+Y ++ N S FCY C+L+C
Sbjct: 579 IYLKPCHIFKVGLYYKEVEIARNDGNSRLFCYTCELRC 616
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,054,395
Number of Sequences: 28952
Number of extensions: 354784
Number of successful extensions: 988
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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