Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1098
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    31   0.17 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    28   1.6  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    27   3.6  
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    27   3.6  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    27   3.6  
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch...    26   4.8  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    25   8.3  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 126 HNTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTRE 19
           +++ YN+   M TS+C+C++  +  YGGN A    E
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 395  VYPYEPTPKESEPFKSVVPDNKPFGYP 475
            VY + P   +SE F +VV DN    YP
Sbjct: 4196 VYQHLPDSSQSETFLNVVTDNSAVDYP 4222


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -1

Query: 129 AHNTKYNQYLKMSTSTCNCNARDRVVYGGNSA 34
           +HN  +N + + S ++ +  +R+ V+  GNS+
Sbjct: 616 SHNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
 Frame = +2

Query: 473 PFDRPVLPQ-YFKNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNA-----LIRKSK 634
           PF + V    YF       RR     +E  +  Y     I Q K  YNA     ++R S 
Sbjct: 2   PFIKAVKSSPYFSRYQTKYRRR----REGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSN 57

Query: 635 RTLTITVYNSRISCEYV 685
           R +T  + +SR++ +YV
Sbjct: 58  RFVTCQIVSSRVNGDYV 74


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
 Frame = +2

Query: 473 PFDRPVLPQ-YFKNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNA-----LIRKSK 634
           PF + V    YF       RR     +E  +  Y     I Q K  YNA     ++R S 
Sbjct: 2   PFIKAVKSSPYFSRYQTKYRRR----REGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSN 57

Query: 635 RTLTITVYNSRISCEYV 685
           R +T  + +SR++ +YV
Sbjct: 58  RFVTCQIVSSRVNGDYV 74


>SPAC25B8.15c |||wybutosine biosynthesis protein
           Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 237

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 428 EPFKSVVPDNKPFGYPFDRPVLP 496
           E  KS VPD  P G+P D P+ P
Sbjct: 19  EGLKSSVPDASPKGHP-DSPIFP 40


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 221 LSFEGLVVEPSSERGCSFC 277
           L++EG+ ++ S  R CSFC
Sbjct: 558 LAYEGIQIDHSRLRECSFC 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,149
Number of Sequences: 5004
Number of extensions: 56676
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)