Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1098
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0184 - 32188778-32188947,32189104-32189173,32189332-321894...    30   1.6  
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614...    28   6.6  
11_05_0063 - 18756289-18756390,18756769-18756954,18757053-187572...    28   8.7  

>03_06_0184 -
           32188778-32188947,32189104-32189173,32189332-32189473,
           32189559-32189739,32189857-32190051,32190782-32190795,
           32190815-32190864,32191493-32191519
          Length = 282

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = -2

Query: 323 LSFRLIMAGNYVKLIYRNYNLALSSVPQPIPRMRELP 213
           +SF L++ G  V+ ++ N++ ALS  P  +PR+ ELP
Sbjct: 133 VSFALVL-GMVVQFVWSNFSSALSGSPSKVPRV-ELP 167


>10_07_0057 +
           12460986-12461036,12461108-12461161,12461420-12461482,
           12461666-12461716,12461996-12462057,12462156-12462318,
           12462829-12462939,12463029-12463166,12463248-12463322,
           12463420-12463540,12464827-12464981,12465080-12465154,
           12465270-12465473,12465670-12465786
          Length = 479

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +1

Query: 304 MMSLKLNGKYFLTISCPLPTHSL*QYSMVFR 396
           MM L + GK    I CP+P+HSL   SMV R
Sbjct: 152 MMHLLIRGKKD-GILCPIPSHSLYTDSMVLR 181


>11_05_0063 -
           18756289-18756390,18756769-18756954,18757053-18757223,
           18757339-18757383,18758087-18758260,18758801-18758887,
           18759349-18759510,18759945-18760015,18760296-18760435,
           18760828-18760952,18761329-18761463,18762069-18762314,
           18762530-18762755,18763039-18763091
          Length = 640

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 398 YPYEPTPKESEPFKSVVPDNKPFGYPFDR 484
           +PYEPTP +++ F  V  D      P DR
Sbjct: 83  FPYEPTPDQNQAFIDVDKDLTERETPMDR 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,724,431
Number of Sequences: 37544
Number of extensions: 351560
Number of successful extensions: 977
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)