Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1098
(726 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26361| Best HMM Match : fn3 (HMM E-Value=0) 31 0.95
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2) 29 2.9
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22) 29 2.9
SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22) 29 3.8
SB_46038| Best HMM Match : TRI5 (HMM E-Value=3.5) 29 5.1
SB_26001| Best HMM Match : HEAT (HMM E-Value=3.6) 28 6.7
SB_42283| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16) 28 8.9
SB_17715| Best HMM Match : BTG (HMM E-Value=3.6e-30) 28 8.9
>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1898
Score = 31.1 bits (67), Expect = 0.95
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = -1
Query: 261 RSELGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLKMS--- 91
R E GST S++ IA +T L S F R Y AH T Y YL +S
Sbjct: 867 RLESGSTLLASDDGIAPNKRTKVYTSLSSDVFY------RFYVYAHTT-YTTYLCLSVNA 919
Query: 90 --TSTCNCNARDRVV 52
T C N+RDRV+
Sbjct: 920 PCTQACRLNSRDRVL 934
>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
Length = 468
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +2
Query: 506 KNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSRISCEYV 685
KN S + +T+ +NYS + +LT + +NY+ L SK LT++ S +S Y+
Sbjct: 3 KNYLTLSIKVLNTLSKNYSTLSRNYLT---LSKNYSTL---SKNYLTLSKNYSTLSKNYL 56
Query: 686 KTVANVINKN*KY 724
N + + Y
Sbjct: 57 TLSKNYLTLSKNY 69
>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
Length = 644
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +2
Query: 506 KNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSRISCEYV 685
KN S + +T+ +NYS + +LT + +NY+ L SK LT++ S +S Y+
Sbjct: 3 KNYLTLSIKVLNTLSKNYSTLSRNYLT---LSKNYSTL---SKNYLTLSKNYSTLSKNYL 56
Query: 686 KTVANVINKN*KY 724
N + + Y
Sbjct: 57 TLSKNYLTLSKNY 69
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Frame = +2
Query: 506 KNLTCSSRRSWSTMKENYSPIYLTFLT-----IHQIKRNYNALIRKSKRTLTITVYNSRI 670
KN S + +T+ +NYS + +LT ++ + +NY+ L SK LT++ S +
Sbjct: 74 KNYLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTL---SKNYLTLSKNYSTL 130
Query: 671 SCEYVKTVAN--VINKN 715
S Y+ N ++KN
Sbjct: 131 SKNYLTLSKNYSTLSKN 147
>SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22)
Length = 398
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 446 VPDNKPFGYPFDRPVLPQYFKNLTCSSRRSWST-MKENYSPIYLTFL 583
V N + P+D+P+ P Y KN TC++ R W+ +++ Y T L
Sbjct: 255 VDTNVVYAMPYDQPI-PGY-KNNTCNTMRLWAAKASKDFDLSYYTSL 299
>SB_46038| Best HMM Match : TRI5 (HMM E-Value=3.5)
Length = 541
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 389 CFVYPYEPTPKESEPFKSVVPDNK 460
CF+Y Y P PKE+ F PD K
Sbjct: 503 CFIYGY-PIPKEALAFSDPTPDGK 525
>SB_26001| Best HMM Match : HEAT (HMM E-Value=3.6)
Length = 450
Score = 28.3 bits (60), Expect = 6.7
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = -1
Query: 258 SELGSTTNPSNERIAYG--DGVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLKMSTS 85
S+ G +PS+E G DG++ + T E +R H TK N YLK+
Sbjct: 20 SDFGMEESPSSEVDVEGGQDGLESSDYIAPVG--TTKEYSRNLTPTHQTKKNLYLKLDEI 77
Query: 84 TCNCNARDRVVYGGNSAD 31
+ R+ VY G + D
Sbjct: 78 LIDALHREFEVYPGATVD 95
>SB_42283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/57 (19%), Positives = 30/57 (52%)
Frame = +2
Query: 479 DRPVLPQYFKNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTI 649
D P+L +++ + C + SWS + ++L++L + +++ N + +K + +
Sbjct: 19 DAPLLIFFYEPVPCDDKYSWSV---TFRSLFLSYLEWSRAQQDINTALENNKPVIAL 72
>SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)
Length = 896
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = +2
Query: 401 PYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKNLTCSSRRSWSTMKENYSP 565
P PTP+ S P + P +KP +P P + R ST +N P
Sbjct: 130 PQHPTPQHSPPIRKQTPPSKP--HPSPTPAQAPPHSRPVAAKRPMPSTPDQNPCP 182
>SB_17715| Best HMM Match : BTG (HMM E-Value=3.6e-30)
Length = 184
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +2
Query: 404 YEPTPKESEPFKSVVPDNKPFG----YPFD-RPVLPQYFKNLTCSSRRSWSTMKENY 559
+ P P+ +PF + + P+ YP + R P+YF+N +R W + N+
Sbjct: 122 FTPPPRRHQPFTPINFNTSPYHCTVTYPANNRTYNPKYFQNKENFNRYHWVNREANF 178
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,671,046
Number of Sequences: 59808
Number of extensions: 420814
Number of successful extensions: 1360
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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