Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1098
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    31   0.59 
At5g64270.1 68418.m08074 splicing factor, putative similar to sp...    30   1.4  
At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase I...    28   7.2  
At1g64260.1 68414.m07281 zinc finger protein-related contains Pf...    27   9.6  
At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protei...    27   9.6  

>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 422 P*VSVHTDRRNTMEYCYKLWVGNGQDIVKKYFPLSF 315
           P + V T   N  EY  KL + +G D   KYFPL+F
Sbjct: 384 PLIVVDTKNLNC-EYQLKLMIASGVDAANKYFPLAF 418


>At5g64270.1 68418.m08074 splicing factor, putative similar to
           splicing factor 3B subunit 1 (Spliceosome associated
           protein 155) (SAP 155) (SF3b155) (Pre-mRNA splicing
           factor SF3b 155 kDa subunit) (146 kDa nuclear protein)
           SP:O57683 from [Xenopus laevis]
          Length = 1269

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +2

Query: 347 PVRCRPTACSSTPWCFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKNL 514
           P+R        TP     P    P+E+   +  VP   P G PF +P   QYF +L
Sbjct: 387 PIRTPARKLQQTPTPMATPGYVIPEENRGQQYDVPPEVPGGLPFMKPEDYQYFGSL 442


>At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase IV
           GI:9651815 from [Arabidopsis thaliana]; identical to
           cDNA DNA ligase IV, GI:9651814
          Length = 1219

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/65 (26%), Positives = 34/65 (52%)
 Frame = +2

Query: 485 PVLPQYFKNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNS 664
           P+LP+YF +LT +SR       + +S  Y   L +  +K+  +   ++S+ + +I  Y  
Sbjct: 733 PLLPKYFLHLTDASRTKLQDDIDEFSDSYYWDLDLEGLKQVLSN-AKQSEDSKSIDYYKK 791

Query: 665 RISCE 679
           ++  E
Sbjct: 792 KLCPE 796


>At1g64260.1 68414.m07281 zinc finger protein-related contains Pfam
           profiles PF03108: MuDR family transposase, PF04434: SWIM
           zinc finger
          Length = 719

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 422 P*VSVHTDRRNTMEYCYKLWVGNGQDIVKKYFPLSF 315
           P + V T   N  +Y  KL + +G D   K+FPL+F
Sbjct: 377 PLIVVDTKSLNG-KYQLKLMIASGVDAANKFFPLAF 411


>At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 455

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/77 (24%), Positives = 37/77 (48%)
 Frame = -1

Query: 264 PRSELGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLKMSTS 85
           P+     ++ PS ER A+    D+ ++ V++K      + RV FK+ N + +  +   + 
Sbjct: 229 PKPSSKESSLPSKER-AFKSRNDEPSQRVAFKSRNDDPSQRVAFKSRNDEPSHRVAFKSR 287

Query: 84  TCNCNARDRVVYGGNSA 34
               + RDR +Y  + A
Sbjct: 288 NDESSQRDRPLYSADWA 304


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,445,262
Number of Sequences: 28952
Number of extensions: 292274
Number of successful extensions: 825
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)