Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1097
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853     32   0.44 
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111     32   0.58 
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    31   1.0  
06_01_0350 + 2534422-2535615                                           31   1.3  
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    29   3.1  
05_02_0120 - 6797954-6798970,6799466-6799951                           29   3.1  
05_06_0098 + 25560158-25560925                                         29   4.1  
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199...    29   5.4  
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969...    29   5.4  
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994...    28   9.5  
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555...    28   9.5  
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172...    28   9.5  
06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866     28   9.5  
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462...    28   9.5  
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647...    28   9.5  

>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
          Length = 625

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -3

Query: 297 LPTLFYRLEALHLGACCGYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLP 121
           +P+L   +E  HL    G+   P+ H    P P+      S  R PP  R S RSE   P
Sbjct: 12  MPSLLADVEVSHLA---GFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFP 68

Query: 120 SI 115
            +
Sbjct: 69  PL 70


>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
          Length = 553

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
 Frame = -3

Query: 264 HLGACCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRT-LR 88
           HL      G    RH  V  SP   R+  + RT P  R + R     PSI    +RT  +
Sbjct: 240 HLANVVNQGLTQTRHTSVRVSPSVGRTVSATRTTPATR-AGRGMSNAPSIQIPQSRTRFK 298

Query: 87  QKRKLFPDLSAASSGHFG 34
           +     P +   +   FG
Sbjct: 299 RVGATSPGIVTLNDNQFG 316


>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = -3

Query: 414 TNIDQTRH------RPHPLPVQTRHAPVLRANP 334
           T IDQ  H      + H +PVQ  H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356


>06_01_0350 + 2534422-2535615
          Length = 397

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 109 PWNSNAQAEKKTLPGPLGGVFRP 41
           PW S+A+ E+K LP PL  +F P
Sbjct: 42  PWRSSARLERKLLPPPLPWLFLP 64


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 384 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 295
           H L +  RH P L+A P S +    C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136


>05_02_0120 - 6797954-6798970,6799466-6799951
          Length = 500

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
 Frame = +3

Query: 351 PGRVGFGREADAAGA-----GSGRCSCVMFVLAS*YFNIMRPQKLYIFNMTLAKIVLRSD 515
           PGR G GRE  A G      G GR +CV    A     ++    L  F + L      +D
Sbjct: 419 PGRFGAGREEGAGGLAYTAFGGGRHACVGEAFAYMQIKVIWSHLLRNFELQLVSPFPETD 478

Query: 516 W 518
           W
Sbjct: 479 W 479


>05_06_0098 + 25560158-25560925
          Length = 255

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 393 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLE 271
           HRP P P  +   P L  +P + V   I   P PT F + +
Sbjct: 31  HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQAD 71


>06_01_0268 +
           1989069-1989293,1989938-1990020,1990136-1990357,
           1990434-1990621,1990711-1990835,1990988-1991039,
           1991585-1991874,1992229-1992307,1992527-1992657
          Length = 464

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 378 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 265
           +P Q + A  + A+P + V    C LP P+LF  L  L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329


>04_03_0732 +
           19095320-19095827,19095848-19096621,19096863-19096906,
           19097191-19097250
          Length = 461

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 390 RPHPLPVQTRHAPVLRANPYSEVTDP 313
           RP+PL V +RHA VL    +  V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158


>12_02_0854 +
           23697826-23698033,23699111-23699276,23699430-23699466,
           23699531-23700145
          Length = 341

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -1

Query: 416 ARTSTRPGTGRIRFPSKPDTPRSSE 342
           A TST PG GR R PS P TP  S+
Sbjct: 16  AATSTDPGRGRKRPPS-PSTPTPSD 39


>12_01_0655 +
           5546293-5546478,5546760-5546877,5550697-5550776,
           5551329-5552345,5552523-5553344,5553528-5553800
          Length = 831

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 606 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCS 734
           C T   RS  N H   +  CL+  +H     G   NVI  +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284


>11_08_0081 -
           28216179-28216381,28216590-28216657,28217131-28217298,
           28217370-28217436,28217509-28217576,28218256-28218420,
           28218490-28218556,28218629-28218696,28219855-28219992,
           28220189-28220353,28221227-28221304,28221380-28221532,
           28222753-28222823,28223077-28223203,28223306-28223565,
           28223679-28223842,28224287-28224450,28225873-28226159
          Length = 826

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = -3

Query: 432 LKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP--ICRLPLPTLFYRLEALHL 259
           +K +   N+D    RP P PV       LRA PY     P  +  + L  +   L ++++
Sbjct: 1   MKPSPAANLDVRVERPRPPPVHPHRPGSLRARPYYRRWTPWIVAAIALSCVVVFLVSMYV 60

Query: 258 GAC 250
             C
Sbjct: 61  NDC 63


>06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866
          Length = 785

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 331 FRSYGSNLPTSLTYIILSTRGSSPWSL 251
           +RS    LPTS +++ L+  GS  W+L
Sbjct: 724 WRSANEQLPTSASFVKLADMGSETWAL 750


>05_04_0162 +
           18645459-18645827,18645934-18646149,18646224-18646278,
           18646545-18646672,18647134-18647217,18648742-18648867,
           18648949-18649086
          Length = 371

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 404 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 318
           TRP TG+   P K D  RS   + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136


>04_04_0433 +
           25163111-25163471,25163943-25164154,25164420-25164701,
           25164794-25164916,25165511-25165664,25165754-25165965,
           25166143-25166212,25166294-25166424
          Length = 514

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 606 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 734
           CT++ +R A  W G G    L    HC  P       V+S +CS
Sbjct: 26  CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,170,184
Number of Sequences: 37544
Number of extensions: 539687
Number of successful extensions: 1766
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1766
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)