Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1097
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    31   1.2  
U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linke...    31   1.2  
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    31   1.2  
AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-lin...    31   1.2  
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   3.7  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   3.7  

>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = -1

Query: 593 SRTKRNRHDLTARKIRGRPENAGPDPVRT*DDFRECHIKYIQFLRPHYIKI--LTR*NEH 420
           S  KR    L  R+   RPE        + D   E   +    +R + +KI  LT  NE+
Sbjct: 506 SMKKRIARALIRRRSTTRPERGSSS--NSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 563

Query: 419 NARTSTRPGTGRIRFPSKPDT 357
              TS++PG  R+  P+K DT
Sbjct: 564 RGETSSQPGRDRLAPPNKTDT 584


>U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform a protein.
          Length = 682

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = -1

Query: 593 SRTKRNRHDLTARKIRGRPENAGPDPVRT*DDFRECHIKYIQFLRPHYIKI--LTR*NEH 420
           S  KR    L  R+   RPE        + D   E   +    +R + +KI  LT  NE+
Sbjct: 475 SMKKRIARALIRRRSTTRPERGSSS--NSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 532

Query: 419 NARTSTRPGTGRIRFPSKPDT 357
              TS++PG  R+  P+K DT
Sbjct: 533 RGETSSQPGRDRLAPPNKTDT 553


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = -1

Query: 593 SRTKRNRHDLTARKIRGRPENAGPDPVRT*DDFRECHIKYIQFLRPHYIKI--LTR*NEH 420
           S  KR    L  R+   RPE        + D   E   +    +R + +KI  LT  NE+
Sbjct: 506 SMKKRIARALIRRRSTTRPERGSSS--NSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 563

Query: 419 NARTSTRPGTGRIRFPSKPDT 357
              TS++PG  R+  P+K DT
Sbjct: 564 RGETSSQPGRDRLAPPNKTDT 584


>AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1b protein.
          Length = 682

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = -1

Query: 593 SRTKRNRHDLTARKIRGRPENAGPDPVRT*DDFRECHIKYIQFLRPHYIKI--LTR*NEH 420
           S  KR    L  R+   RPE        + D   E   +    +R + +KI  LT  NE+
Sbjct: 475 SMKKRIARALIRRRSTTRPERGSSS--NSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 532

Query: 419 NARTSTRPGTGRIRFPSKPDT 357
              TS++PG  R+  P+K DT
Sbjct: 533 RGETSSQPGRDRLAPPNKTDT 553


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -3

Query: 423  T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 310
            T +++ID T H PHP+ VQ   T+   V+   P   V+ P+
Sbjct: 904  TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 639 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 737
           W+  G   C+ + K CDG + C       QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 639 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 737
           W+  G   C+ + K CDG + C       QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,708,964
Number of Sequences: 27780
Number of extensions: 416976
Number of successful extensions: 1346
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)