Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1097
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.2  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   5.5  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   5.5  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   5.5  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.5  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   5.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.5  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   5.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   7.3  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 376 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 474
           K +RPV    DV  +C   ++S LI   LKN I
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 376 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 474
           K +RPV    DV  +C   ++S LI   LKN I
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 611 RTESCRSRTKRNRHD 567
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 611 RTESCRSRTKRNRHD 567
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 611 RTESCRSRTKRNRHD 567
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 611 RTESCRSRTKRNRHD 567
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 611 RTESCRSRTKRNRHD 567
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 611 RTESCRSRTKRNRHD 567
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 611 RTESCRSRTKRNRHD 567
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 69  PDLSAASSGHFGLPRRTLVFK 7
           PDL+  S G  GLP   L  +
Sbjct: 336 PDLAGTSQGSAGLPSAILAMR 356


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 138 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 55
           SE   P+   HG R  RQ+ +   D  +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,672
Number of Sequences: 438
Number of extensions: 5532
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)