Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1097
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put...    31   1.1  
At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    30   1.5  
At1g76965.1 68414.m08961 glycine-rich protein                          29   2.6  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    29   3.4  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    29   3.4  
At1g21570.1 68414.m02697 zinc finger (CCCH-type) family protein ...    29   3.4  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   4.5  
At5g42370.1 68418.m05159 expressed protein                             29   4.5  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   6.0  
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1...    28   7.9  
At2g19150.1 68415.m02235 pectinesterase family protein contains ...    28   7.9  

>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 493 RKSSYVRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFNGQLRT 639
           R ++YV T SG       R++L+      R+  D HD +  PFNG   T
Sbjct: 176 RNNTYV-TQSGSLMMSF-RVYLSNSDASIRYADDVHDRIWSPFNGSSHT 222


>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 522 RTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQN 638
           R+RVLRPS  + + + +S  FR  S     T   R A N
Sbjct: 37  RSRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75


>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 398 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 303
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 464 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 288
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 464 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 288
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At1g21570.1 68414.m02697 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 470

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -3

Query: 393 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGACCGYGYEPARHLH 214
           H P  + V T+    L AN   ++T  +    +P   Y L+ L     C Y     RH+H
Sbjct: 266 HDPSKIAVCTKFLNGLCANANCKLTHKVIPERMPDCSYYLQGLCNNEACPY-----RHVH 320

Query: 213 VHP 205
           V+P
Sbjct: 321 VNP 323


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 185 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 51
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 124 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 14
           P Y +  +   Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 180 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 82
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
           putative / heat shock protein clpB, putative /
           HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
           [Phaseolus lunatus]
          Length = 964

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 180 LRTLKIQVRDVRGDVAPVRTHIRSRLQGEEPLVDRIM*VREVGKLDP*LRNKD 338
           ++ LK  ++DVRGD      +  S+ Q  E   + +  +   GKLDP +   D
Sbjct: 214 IQVLKDAIKDVRGDQRVTDRNPESKYQALEKYGNDLTEMARRGKLDPVIGRDD 266


>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 155 ICGGVRILSADLENSGEGCTWRCRAGSYP 241
           I GG+  +    ++  EGCT + R G YP
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,854,206
Number of Sequences: 28952
Number of extensions: 397208
Number of successful extensions: 1076
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)