Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1094
         (775 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   0.67 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    25   0.67 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   0.67 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   0.67 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    25   0.67 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.67 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   0.67 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.6  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   3.6  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   4.7  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   4.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.7  

>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -3

Query: 371 PTYATPLMSPYNARLESSSTGSSFPADSFSVARVRPRTSRASQTCYCSISCGSKT 207
           P    PL +P N+    SS G + P    +    +P TS ASQ      S  S T
Sbjct: 123 PRSTPPLSTPSNSNATKSS-GLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 176


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -3

Query: 371 PTYATPLMSPYNARLESSSTGSSFPADSFSVARVRPRTSRASQTCYCSISCGSKT 207
           P    PL +P N+    SS G + P    +    +P TS ASQ      S  S T
Sbjct: 123 PRSTPPLSTPSNSNATKSS-GLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 176


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -3

Query: 371 PTYATPLMSPYNARLESSSTGSSFPADSFSVARVRPRTSRASQTCYCSISCGSKT 207
           P    PL +P N+    SS G + P    +    +P TS ASQ      S  S T
Sbjct: 123 PRSTPPLSTPSNSNATKSS-GLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 176


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -3

Query: 371 PTYATPLMSPYNARLESSSTGSSFPADSFSVARVRPRTSRASQTCYCSISCGSKT 207
           P    PL +P N+    SS G + P    +    +P TS ASQ      S  S T
Sbjct: 123 PRSTPPLSTPSNSNATKSS-GLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 176


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -3

Query: 371 PTYATPLMSPYNARLESSSTGSSFPADSFSVARVRPRTSRASQTCYCSISCGSKT 207
           P    PL +P N+    SS G + P    +    +P TS ASQ      S  S T
Sbjct: 79  PRSTPPLSTPSNSNATKSS-GLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 132


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -3

Query: 371 PTYATPLMSPYNARLESSSTGSSFPADSFSVARVRPRTSRASQTCYCSISCGSKT 207
           P    PL +P N+    SS G + P    +    +P TS ASQ      S  S T
Sbjct: 123 PRSTPPLSTPSNSNATKSS-GLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 176


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -3

Query: 371 PTYATPLMSPYNARLESSSTGSSFPADSFSVARVRPRTSRASQTCYCSISCGSKT 207
           P    PL +P N+    SS G + P    +    +P TS ASQ      S  S T
Sbjct: 123 PRSTPPLSTPSNSNATKSS-GLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 176


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 388 SSLKNHYFHCFITYSVGRK 444
           SS    +FHC+     GRK
Sbjct: 416 SSFFQQFFHCYCPIKFGRK 434


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 463 YYRPRTASAQPSK 425
           YYRPRT+  +P +
Sbjct: 232 YYRPRTSRTEPPR 244


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 613 ALFFDRCTAPVKLPAWQC 560
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 613 ALFFDRCTAPVKLPAWQC 560
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 102 RYRN*PDKSLHQLRTAMHHH 43
           R RN PD S H LR+    H
Sbjct: 53  RLRNVPDNSFHFLRSLKKVH 72


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,394
Number of Sequences: 336
Number of extensions: 3728
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)