Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1094
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278... 30 1.8
05_05_0177 - 22993844-22994617 29 3.1
02_04_0618 - 24428987-24429331,24429946-24430387,24433358-24433434 29 3.1
08_01_0658 - 5682425-5682832,5682878-5683000 29 4.1
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 5.4
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 5.4
01_06_0456 + 29521282-29522064 29 5.4
05_03_0650 - 16582296-16583042 28 7.2
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 7.2
01_03_0071 + 12203227-12203368,12203551-12203703,12204622-122046... 28 7.2
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127... 28 9.5
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 28 9.5
>05_01_0356 +
2785410-2785670,2785843-2785960,2786800-2786891,
2787114-2787176,2787299-2787397,2787726-2787884,
2788420-2788491,2788567-2788699,2788813-2788877,
2789016-2789091,2789236-2789337,2789524-2789716,
2790576-2790654,2792939-2793007,2793261-2793311,
2793680-2793742,2793926-2794041,2794263-2794347,
2794898-2794957,2795594-2795639,2796011-2796084,
2796350-2796400,2796474-2796674,2796747-2796791,
2797063-2797156,2797226-2797371,2797510-2797739,
2798136-2798196,2798290-2798347,2799020-2799513
Length = 1151
Score = 30.3 bits (65), Expect = 1.8
Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 5/136 (3%)
Frame = -2
Query: 765 LHLLLKTLYTKGSIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSL--TDV 592
++L+L LY RA AV + E L Q CP+ ++ LAE+ L +SL +
Sbjct: 578 MNLMLGKLYRISRNNRAAAVCYK-ECLRQ---CPYVFEAITALAEMGLSSKEFSLIFSQA 633
Query: 591 PPQSNSPPGSVLEPDHAGVLNGDERFRQSPLCTLGTKHRAPADI-IDRAPLPPNRVS--N 421
P + PG L+ R+ ++ C ++ DI +D PN V
Sbjct: 634 PNRGGKAPGDSLDAQRWW-----NRYVEAQCCIASHDYKGGLDIYLDLMQRFPNNVHILL 688
Query: 420 ETMKVVVFQRRSRETI 373
E KV R+ E I
Sbjct: 689 EIAKVEAIIGRNDEAI 704
>05_05_0177 - 22993844-22994617
Length = 257
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 249 CPRCPGPHARYTERISGERRPC*A*L*SGIVRRHERC 359
C C G H RY+ ++ G R C +G+VR + C
Sbjct: 217 CGSCDGSHKRYSHKVGGGFRACAMCNENGLVRCPDCC 253
>02_04_0618 - 24428987-24429331,24429946-24430387,24433358-24433434
Length = 287
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 380 KRSPTYATPLMSPYNARLESSSTGSSFPADSFSVARVRPRTSRAS-QTCYC 231
+R PT A PL + AR+ ++S + + FS+A R + +S CYC
Sbjct: 88 RRQPTCAAPLGAQVAARVSAASAPLAGDSPMFSIAVPRSASGISSFAGCYC 138
>08_01_0658 - 5682425-5682832,5682878-5683000
Length = 176
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/75 (22%), Positives = 26/75 (34%)
Frame = -3
Query: 404 WFFSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSFSVARVRPRTSRASQTCYCSI 225
W + + R P S +E ++ S S R + CY S
Sbjct: 32 WRLATEARGRPHAAVGPSRSSREFEVEEDDDATTASRSSASSTRSGSKAEAEQSGCYGSE 91
Query: 224 SCGSKTPVPLRRILI 180
GS P+P+R I +
Sbjct: 92 EAGSAAPLPIRSIFL 106
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 505 TTLHAWNETPCARRYY 458
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 512 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 601
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>01_06_0456 + 29521282-29522064
Length = 260
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -1
Query: 571 AWQC--PRTGSRGSFKRRRAFPPVTT 500
AW+C P +G+RG +RRR P TT
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTT 37
>05_03_0650 - 16582296-16583042
Length = 248
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 249 CPRCPGPHARYTERISGERRPC*A*L*SGIVRRHERCS 362
C C G H RY+E+ +G R C A +G+VR CS
Sbjct: 210 CGTCDGSHRRYSEK-TGGFRVCTACNENGLVRCAACCS 246
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 591 PPQSNSPPGSVLEPDHAGVLNGDE 520
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>01_03_0071 +
12203227-12203368,12203551-12203703,12204622-12204683,
12204749-12204830,12206029-12206126,12206240-12206657,
12206793-12206915,12207159-12207178
Length = 365
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -2
Query: 591 PPQSNS---PPGSVLEPDHAGVLNGDERFRQSPLCTLGTKHRA 472
PP + S PP +VL H V+ GDE +++ + LG RA
Sbjct: 6 PPHAGSGGPPPPAVLALPHGMVVVGDEAVQRAVVLRLGVNFRA 48
>12_01_0171 -
1268803-1269500,1271491-1271567,1271941-1272065,
1272146-1272234,1272851-1272936,1273509-1273765
Length = 443
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 395 SDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSFSVARVRPRTSRAS 246
S D A SP+ ++ SP ++ E SS+ S P R RPRT +++
Sbjct: 6 SPDPASSSPSASSSPSSPSSSSSEDSSSPMSMPCKR----RARPRTEKST 51
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 395 SDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSFSVARVRPRTSRAS 246
S D A SP+ ++ SP ++ E SS+ S P R RPRT +++
Sbjct: 6 SPDPASSSPSASSSPSSPSSSSSEDSSSPMSMPCKR----RARPRTDKST 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,286,973
Number of Sequences: 37544
Number of extensions: 492058
Number of successful extensions: 1553
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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