Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1094
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z81038-14|CAI79153.1|  696|Caenorhabditis elegans Hypothetical p...    30   2.1  
Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical p...    30   2.1  
Z32679-2|CAA83592.1|  385|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   6.4  
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical
           protein F08G5.7 protein.
          Length = 401

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -3

Query: 374 SPTYATPLMSPYNARLESSSTGSSFPADSFSVARVRPRTSRASQTCYCSISCGSKTPVP 198
           +PT  T   +P   +  +S+T   F   +    + +  TS  S T    I+C S  PVP
Sbjct: 229 TPTTVTTTKAPTTTKTSTSTTTPKFTTTTIQTTK-KITTSPTSTTASIPITCTSNCPVP 286


>Z81038-14|CAI79153.1|  696|Caenorhabditis elegans Hypothetical
           protein C25A1.10b protein.
          Length = 696

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = -3

Query: 398 FSDDRA--KRSPTYATPLMSPYNARLESSSTGSSFPADSFSVARVRPR-TSRASQTCYCS 228
           FSDD A  K++P  A P  +   A   S S+    PA   + A+  P+ T++ + +    
Sbjct: 286 FSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKTTPKPTAKKAASSSSD 345

Query: 227 ISCGSKTPV 201
            S   K PV
Sbjct: 346 SSDDEKKPV 354


>Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical
           protein C25A1.10a protein.
          Length = 971

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = -3

Query: 398 FSDDRA--KRSPTYATPLMSPYNARLESSSTGSSFPADSFSVARVRPR-TSRASQTCYCS 228
           FSDD A  K++P  A P  +   A   S S+    PA   + A+  P+ T++ + +    
Sbjct: 561 FSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDEKPAAKSTPAKTTPKPTAKKAASSSSD 620

Query: 227 ISCGSKTPV 201
            S   K PV
Sbjct: 621 SSDDEKKPV 629


>Z32679-2|CAA83592.1|  385|Caenorhabditis elegans Hypothetical
           protein C05B5.2 protein.
          Length = 385

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 401 FFSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSFSVARV 270
           F+S+  A RS +   P+MS     + +++T +  PA S  VA +
Sbjct: 46  FYSNITAPRSTSVLAPVMSSLEVYINTTTTSAFAPAQSIKVADI 89


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -2

Query: 492 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 358
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +1

Query: 247 DALDVLGRTRATLKESAGKED-PVELDSSLAL*GDMRGVA*VGDRFARSSLKNHYFHCFI 423
           DA+  L  T A    S    D    LD   AL G +R VA + DR  R SLKN     F+
Sbjct: 30  DAIFSLATTSAARYVSDSSADNTTRLDE--ALNGMIRYVADM-DRATRLSLKNQQLKEFL 86

Query: 424 TYSVGRKRCAVDNIGGRTVF 483
           TY+      +  NI  R+ F
Sbjct: 87  TYTPVILNASTTNIVTRSKF 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,757,781
Number of Sequences: 27780
Number of extensions: 371334
Number of successful extensions: 1118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)