Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1094
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    31   0.85 
At5g34960.1 68418.m04125 hypothetical protein includes At5g34960...    29   3.4  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.4  
At4g29590.1 68417.m04218 expressed protein                             28   6.0  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   7.9  
At4g01210.1 68417.m00159 glycosyltransferase family protein 1 co...    28   7.9  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    28   7.9  
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ...    28   7.9  

>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 492 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 346
           LG +H  PA +I+R P PP  +S   +++++F     E    +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277


>At5g34960.1 68418.m04125 hypothetical protein includes At5g34960,
           At2g14450, At1g35920
          Length = 1033

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -3

Query: 332 RLESSSTGSSFPADSFSVARVRPRTSRASQTCYCSISCGSKTPVPLRRILI 180
           R   S  G S   D FSV +++P++  A+     S+    + P+  R++L+
Sbjct: 689 RTAHSRFGISLNPDEFSVCKIKPKSDLANLVKEASLVIWDEAPMMSRQVLL 739


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 631 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 744
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At4g29590.1 68417.m04218 expressed protein
          Length = 317

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 28/136 (20%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
 Frame = -2

Query: 693 EHLDQASFCPF--APREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLNGDE 520
           +  D++S   F  APR V+ + + A+  L    + V PQS++P  S+L+   + V +   
Sbjct: 114 QRYDESSDSTFYEAPRFVTHIDDPAIAALTKYYSKVLPQSDTPGVSILDMCSSWVSHYPP 173

Query: 519 RFRQSPLCTLGTKHRAPADIIDRAPLPPNRVSNE--TMKVVVFQRRSRETISHLCYTSHV 346
            +RQ  +  +G       + + R P+    +  +      + F+  S + I+++    ++
Sbjct: 174 GYRQERIVGMGMNE----EELKRNPVLTEYIVQDLNLNSNLPFEDNSFQVITNVVSVDYL 229

Query: 345 SLQCQTRVKLNRVFFP 298
           +   +   ++NR+  P
Sbjct: 230 TKPLEVFKEMNRILKP 245


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 456 DRAPLPPNRVSNETMKVVVFQRRSRET 376
           +RAPLP   V  E +  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At4g01210.1 68417.m00159 glycosyltransferase family protein 1
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 981

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -2

Query: 774 VTFLHLLLKTLYTKGSIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRY 607
           V F + LL  LYT+   G  + +P   E + +A    F P++  V+  +      Y
Sbjct: 283 VVFHNYLLPILYTEFDAGNFYVIPGSPEEVCKAKNLEFPPQKDDVVISIVGSQFLY 338


>At3g47910.1 68416.m05224 expressed protein low similarity to
            nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
            GI:189036; contains Pfam profiles PF04780: Protein of
            unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1290

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 525  DERFRQSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 400
            D R  +    T+G+ HR+ AD ++ +PLP   V + +   +V
Sbjct: 962  DTRKVKDMKATIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003


>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
           F-box family protein
          Length = 379

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 507 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 370
           S LC LG+  R PAD I+   L   R+    M  +V  R S + I+
Sbjct: 54  SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,966,057
Number of Sequences: 28952
Number of extensions: 354739
Number of successful extensions: 1028
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)