Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1093
         (789 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39070.1 68417.m05533 zinc finger (B-box type) family protein...    29   3.5  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.5  
At2g21320.1 68415.m02537 zinc finger (B-box type) family protein       28   8.1  

>At4g39070.1 68417.m05533 zinc finger (B-box type) family protein
           salt-tolerance protein - Arabidopsis thaliana,
           PID:e224078
          Length = 242

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 644 DQASFCPFAPREVSVLAELALGHLRYSLTDVPAPVKLPACSV 769
           D+A+ C    R V    +LA  HLR+SLT  P     P C +
Sbjct: 20  DEAALCNGCDRHVHFANKLAGKHLRFSLTS-PTFKDAPLCDI 60


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 697 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 584
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At2g21320.1 68415.m02537 zinc finger (B-box type) family protein
          Length = 172

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 644 DQASFCPFAPREVSVLAELALGHLRYSLTDVPAPVKLPACSVLE 775
           D+A+ C     +V    +LA  HLR  L D   P   P+C + E
Sbjct: 20  DEAALCCSCDEKVHKCNKLASRHLRVGLAD---PSNAPSCDICE 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,506,817
Number of Sequences: 28952
Number of extensions: 368277
Number of successful extensions: 958
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)