Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1092
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   6.8  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   9.0  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 503  YKILKQSHPVKRMIRGIGAETTSTYSQ 423
            YK L Q + VK ++  + +ET S+Y++
Sbjct: 1086 YKSLIQKYKVKSVLSAVDSETASSYAK 1112


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 18/75 (24%), Positives = 34/75 (45%)
 Frame = +1

Query: 121 VPVTVVYRQNASAPSIFRAGCFGR*VVAHSLADSDFHGHRPAVMRTNAFHGVP*AFFRRL 300
           +P  V Y+ +  +P + R     R      L D++ H   P+   T++    P + FRR 
Sbjct: 550 MPEVVAYKGDEESPRVSRNTSLAR---RKPLPDTESHSPSPSA--TSSIKKNPSSIFRRF 604

Query: 301 NTTFGSSHSASSAYQ 345
           ++    + S++S  Q
Sbjct: 605 SSRRKQNKSSTSTLQ 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,361,919
Number of Sequences: 5004
Number of extensions: 73416
Number of successful extensions: 157
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)