Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1092
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    32   0.48 
At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ...    31   0.85 
At1g74690.1 68414.m08650 calmodulin-binding family protein low s...    29   2.6  
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p...    29   4.5  
At3g21150.1 68416.m02672 zinc finger (B-box type) family protein...    28   7.9  
At2g35890.1 68415.m04406 calcium-dependent protein kinase, putat...    28   7.9  

>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 131  VTGTCDAKFLIW-YH*AVTSRTCATESAEGSG 39
            VTG+ D+  L+W  H A TSRT  +E + GSG
Sbjct: 2684 VTGSRDSTVLLWRIHKAFTSRTSVSEPSTGSG 2715


>At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26)
            similar to GI:11993492; RNA binding protein - Homo
            sapiens, EMBL:AB016089 (N-terminus), several ubiquitin
            carboxyl-terminal hydrolases from aa pos. 712
          Length = 1067

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 663  LCLVRSKSGETLMEDRSDSDVQIDRRNWV*GRKTN 559
            +C VR K     M + SDS  ++DRR     R+TN
Sbjct: 928  VCFVRGKEAPKAMLEASDSSFEVDRRTSKRSRRTN 962


>At1g74690.1 68414.m08650 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 587

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 353 PLGTVIRSPASSFE*AGVLTHLKFENRLRSFR 448
           P  +V + PAS+FE + V T  +FE   RSFR
Sbjct: 282 PKKSVRKVPASNFESSSVQTSFEFEKPKRSFR 313


>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
            subunit, putative similar to contains 6 WD-40 repeats
            (PF00400); katanin p80 subunit (GI:3005601)
            [Strongylocentrotus purpuratus]
          Length = 974

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +2

Query: 290  LGALTLRLVHPTAPVLLTKIGPLGTVIRSPASSFE*AGVLTHLKFEN 430
            LG+ T R V+ +  +LL  +   GTVIRS  S+    GV  H    N
Sbjct: 881  LGSRTERPVNVSLDMLLKLVAVFGTVIRSTVSAPRIVGVDLHANERN 927


>At3g21150.1 68416.m02672 zinc finger (B-box type) family protein
           contains Pfam profile:PF01760 CONSTANS family zinc
           finger
          Length = 225

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +3

Query: 210 LSGFRLPWPP--SCCHEDQRLSWC 275
           +SG  LPWPP  +CC E    S C
Sbjct: 58  VSGPLLPWPPRTTCCSESSSSSCC 81


>At2g35890.1 68415.m04406 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase, isoform AK1 (CDPK). [Arabidopsis thaliana]
           SWISS-PROT:Q06850; contains protein kinase domain,
           Pfam:PF00069; contains EF hand domain (calcium-binding
           EF-hand), Pfam:PF00036, INTERPRO:IPR002048
          Length = 520

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 251 MTAGRWPWKSESAKECATTHLPKQPALKMDGAEAFC 144
           +T+  WP  SESAK+     L + P  ++   +  C
Sbjct: 351 LTSDPWPQVSESAKDLIRKMLERNPIQRLTAQQVLC 386


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,150,131
Number of Sequences: 28952
Number of extensions: 411879
Number of successful extensions: 882
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)