Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1090
         (772 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   2.7  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   4.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.2  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 683 LVCIYFFKYIILL 721
           LVCIY+F Y+ LL
Sbjct: 255 LVCIYYFYYMHLL 267



 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 683 LVCIYFFKYIILL 721
           L+CIY+F Y  +L
Sbjct: 235 LLCIYYFYYAFIL 247


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1
          protein.
          Length = 697

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 89 YELISQITPCVRSCVR 42
          Y L+++  PC R CV+
Sbjct: 35 YVLLNEDNPCARKCVK 50


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = -2

Query: 558 VYYQR-WQPVHLAKKMLL 508
           VY  R WQ +HL KK +L
Sbjct: 531 VYNHRPWQQLHLNKKQIL 548


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 167 PATTLPRMDSLTSSRRTFEI 226
           P+T    MD L  S+RT EI
Sbjct: 882 PSTIANIMDLLMDSKRTIEI 901


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 167 PATTLPRMDSLTSSRRTFEI 226
           P+T    MD L  S+RT EI
Sbjct: 882 PSTIANIMDLLMDSKRTIEI 901


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 167 PATTLPRMDSLTSSRRTFEI 226
           P+T    MD L  S+RT EI
Sbjct: 882 PSTIANIMDLLMDSKRTIEI 901


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 167 PATTLPRMDSLTSSRRTFEI 226
           P+T    MD L  S+RT EI
Sbjct: 882 PSTIANIMDLLMDSKRTIEI 901


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,741
Number of Sequences: 336
Number of extensions: 3532
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)