Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1090
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    71   2e-13
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    27   3.9  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    27   3.9  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    26   5.2  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.1  

>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 30/54 (55%), Positives = 40/54 (74%)
 Frame = +1

Query: 58  TQGVIWDINSYDQWGVELGKQLAKAIEPELQGTAAVTGHDASTNGLINFLKKNF 219
           T+G +W+INS+DQ+GVELGK+LAK +  +L+    V  HD+STNGLIN  K  F
Sbjct: 497 TEGAVWNINSFDQFGVELGKKLAKNVLAQLETKGDVENHDSSTNGLINLFKNGF 550



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +2

Query: 2   KITPFTLGALIAMYEHKT 55
           KITP +LGALIA YE  T
Sbjct: 478 KITPASLGALIAFYEWVT 495


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 575 KYICESSIIKGGNLCIWPKKCYYMSIQIDLN 483
           K I    I+KGG LC   + C  ++ +ID N
Sbjct: 56  KTILGMQIVKGGALCTHGRDCRLVTWKIDFN 86


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 97   WGVELGKQLAKAIEPELQGTAAVTGHDASTNGLIN 201
            WG++ G+Q A+ I+ + QG   + G        +N
Sbjct: 2076 WGIQEGRQCAREIDLKFQGKTFLPGDGGLVKRTVN 2110


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 208 KKNF*DYSRMTSHIVYLLWWLYV 276
           K+N  D+  ++ +IV  LWW++V
Sbjct: 84  KRNKIDFKFISRYIVATLWWMFV 106


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 190 GLINFLKKNF*DYSRMTSHIVYLLWWL 270
           G I FLKK   D   + SH +Y L W+
Sbjct: 107 GFILFLKKTQGDIGGLYSHPIYPLLWV 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,113
Number of Sequences: 5004
Number of extensions: 59343
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)