Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1090
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0143 + 31962241-31962291,31962385-31962506,31962572-319626...    49   4e-06
06_01_1040 + 8163654-8163704,8163814-8163935,8164011-8164092,816...    48   8e-06
01_05_0677 - 24202037-24202444,24202499-24202795,24202960-242030...    28   7.2  
11_01_0407 + 3090880-3092010                                           28   9.5  

>03_06_0143 +
           31962241-31962291,31962385-31962506,31962572-31962671,
           31962775-31962822,31963096-31963251,31963330-31963426,
           31963525-31963567,31963970-31964037,31964139-31964223,
           31964297-31964345,31964566-31964638,31964708-31964768,
           31965417-31965483,31965709-31965762,31965854-31965982,
           31966485-31966548,31966655-31966728,31966793-31966867,
           31966972-31967040,31967759-31967848,31968014-31968121,
           31968251-31968298
          Length = 576

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
 Frame = +1

Query: 61  QGVIWDINSYDQWGVELGKQLAKAIEPELQGTAA----VTGHDASTNGLI 198
           QG +W INS+DQWGVELGK LA  +   L  +      V G ++ST  L+
Sbjct: 507 QGFLWGINSFDQWGVELGKSLASQVRKSLHASRVEGKPVLGFNSSTTSLL 556


>06_01_1040 +
           8163654-8163704,8163814-8163935,8164011-8164092,
           8164166-8164213,8164516-8164671,8164747-8164843,
           8164942-8164984,8165375-8165442,8165533-8165617,
           8165698-8165746,8165968-8166040,8166119-8166179,
           8167114-8167180,8167400-8167453,8167537-8167665,
           8168192-8168255,8168366-8168439,8168523-8168576,
           8168696-8168764,8169394-8169483,8169656-8169763,
           8169876-8169923
          Length = 563

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
 Frame = +1

Query: 61  QGVIWDINSYDQWGVELGKQLAKAIEPELQGT----AAVTGHDASTNGLI 198
           QG +W INS+DQWGVELGK LA  +   L  +      V G ++ST  L+
Sbjct: 494 QGFLWGINSFDQWGVELGKSLASQVRKSLHASRMEGKPVQGFNSSTASLL 543


>01_05_0677 -
           24202037-24202444,24202499-24202795,24202960-24203009,
           24204534-24204589,24205751-24206040,24206100-24206488,
           24210578-24210818
          Length = 576

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/43 (27%), Positives = 28/43 (65%)
 Frame = -3

Query: 494 IDLNIIVSFKEYGSKPALNKG*YLTCDLSRMSFRRVL*LPMEY 366
           + ++ IV+ K++ ++  + +  Y TC +SR  FRR+L + +++
Sbjct: 418 VGIDRIVTLKQHYNEDLIRQF-YATCSISRRQFRRLLNIRLDF 459


>11_01_0407 + 3090880-3092010
          Length = 376

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 179 ASWPVTAAVPCSSGSIAL-ANCLPSSTP 99
           A+W + AAVPC   + AL A+ LP++ P
Sbjct: 236 AAWALVAAVPCPDRAAALQAHHLPAAPP 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,971,135
Number of Sequences: 37544
Number of extensions: 346454
Number of successful extensions: 721
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)