Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1090
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-9|CAE54920.1|  586|Caenorhabditis elegans Hypothetical ...    88   6e-18
AL110500-8|CAB60430.1|  551|Caenorhabditis elegans Hypothetical ...    88   6e-18
AF016443-3|AAC24281.1|  395|Caenorhabditis elegans Hypothetical ...    33   0.30 
AF016443-2|AAC24272.1|  359|Caenorhabditis elegans Hypothetical ...    28   8.5  

>AL110500-9|CAE54920.1|  586|Caenorhabditis elegans Hypothetical
           protein Y87G2A.8b protein.
          Length = 586

 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 39/52 (75%), Positives = 42/52 (80%)
 Frame = +1

Query: 61  QGVIWDINSYDQWGVELGKQLAKAIEPELQGTAAVTGHDASTNGLINFLKKN 216
           QG+IWDI SYDQWGVELGKQLAK I+PEL     VT HDASTNGLI F+K N
Sbjct: 534 QGIIWDICSYDQWGVELGKQLAKVIQPELASADTVTSHDASTNGLIAFIKNN 585



 Score = 35.1 bits (77), Expect = 0.056
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 5   ITPFTLGALIAMYEHK 52
           +TPFTLGALIA YEHK
Sbjct: 515 VTPFTLGALIAFYEHK 530


>AL110500-8|CAB60430.1|  551|Caenorhabditis elegans Hypothetical
           protein Y87G2A.8a protein.
          Length = 551

 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 39/52 (75%), Positives = 42/52 (80%)
 Frame = +1

Query: 61  QGVIWDINSYDQWGVELGKQLAKAIEPELQGTAAVTGHDASTNGLINFLKKN 216
           QG+IWDI SYDQWGVELGKQLAK I+PEL     VT HDASTNGLI F+K N
Sbjct: 499 QGIIWDICSYDQWGVELGKQLAKVIQPELASADTVTSHDASTNGLIAFIKNN 550



 Score = 35.1 bits (77), Expect = 0.056
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 5   ITPFTLGALIAMYEHK 52
           +TPFTLGALIA YEHK
Sbjct: 480 VTPFTLGALIAFYEHK 495


>AF016443-3|AAC24281.1|  395|Caenorhabditis elegans Hypothetical
           protein C17E7.7 protein.
          Length = 395

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
 Frame = -3

Query: 659 KTNEYQSL*LLMMFYIVHN*ELRTFNSGKYICESSIIKGGNLCIWPKKCYYMSIQIDLNI 480
           +T E+    L    Y+++N E   ++  K  C+    K      W  + Y+  I    + 
Sbjct: 3   ETGEFNLFYLYDYDYVLNN-EAEKYDLLKKFCKFVSSKKK----WISQFYFKRIMQKYSD 57

Query: 479 IVSFKEYGSKPALNKG*YLTCDLSRMSFRRVL*LPMEY--KVNNSFF 345
           I+  K++GS+P       LTCD  +M FRRV+   +EY  K +N+ F
Sbjct: 58  II--KDFGSQPKQ----VLTCDACKMFFRRVVTEKLEYTCKCSNNCF 98


>AF016443-2|AAC24272.1|  359|Caenorhabditis elegans Hypothetical
           protein C17E7.6 protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 425 LTCDLSRMSFRRVL*LPMEYK 363
           LTCD  +M FRR++ L  +YK
Sbjct: 41  LTCDACKMFFRRIVILKKDYK 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,318,287
Number of Sequences: 27780
Number of extensions: 333627
Number of successful extensions: 618
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)