Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1090
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42740.1 68418.m05205 glucose-6-phosphate isomerase, cytosoli...    48   7e-06
At1g63930.1 68414.m07238 expressed protein ; expression supporte...    29   2.6  
At3g13100.1 68416.m01640 ABC transporter family protein similar ...    29   3.4  

>At5g42740.1 68418.m05205 glucose-6-phosphate isomerase, cytosolic
           (PGIC) identical to SP|P34795 Glucose-6-phosphate
           isomerase, cytosolic (EC 5.3.1.9) (GPI) (Phosphoglucose
           isomerase) (PGI) (Phosphohexose isomerase) (PHI)
           {Arabidopsis thaliana}; contains Pfam profile PF00342:
           glucose-6-phosphate isomerase
          Length = 560

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
 Frame = +1

Query: 61  QGVIWDINSYDQWGVELGKQLAKAIEPEL-----QGTAAVTGHDASTNGLI 198
           QG +W INS+DQWGVELGK LA  +  +L     QGTA   G + ST  L+
Sbjct: 499 QGFVWGINSFDQWGVELGKVLATQVRKQLHSSRTQGTAP-EGFNYSTTTLL 548


>At1g63930.1 68414.m07238 expressed protein ; expression supported
           by MPSS
          Length = 415

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = -3

Query: 221 QKFFLRKLMSPFVEASWPVTAAVPCSSGSIALANCLPSSTPH 96
           Q  F+   +  FV   W +TAAVPC   S  LAN LP    H
Sbjct: 261 QPMFIMSTVMVFV--MWVLTAAVPCQERS-GLANHLPVPPKH 299


>At3g13100.1 68416.m01640 ABC transporter family protein similar to
           ATP-binding cassette transporter MRP8 GI:18031899 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00005
           ABC transporter
          Length = 1493

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 437 YLMQVLNRIL*RRRLYSNQSVLTYNNIFLAKCTGC 541
           YLM    + L  +R YSNQ V+     F+AK   C
Sbjct: 328 YLMDTFVQYLNGQRQYSNQGVVLVTTFFVAKLVEC 362


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,992,371
Number of Sequences: 28952
Number of extensions: 296212
Number of successful extensions: 560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)