Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1089
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   1.8  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   7.2  
SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   7.2  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   9.5  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   9.5  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   9.5  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 617 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 751
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 333 SSFPADSPKPVPLAVVSLDSR*GQWEFVNPF 241
           S  P  +P+PVP   V++D +  + E + PF
Sbjct: 547 SYIPEPNPQPVPETEVTIDPKSDRLEALEPF 577


>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 520 HAWNKHRAPADIIDRAPLP 464
           HAW  H  P +II   P+P
Sbjct: 57  HAWKMHCMPTEIIAYQPIP 75


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 734  SPYAY*TSGSSQLLPFCSTRGF 669
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 208 GYLKRVIVTPAVYPRLLEFLHVDIQST 128
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -3

Query: 402 RSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWEFVNP 244
           + PT    L  P   R  +S +    P    K +P    +LD + G W F NP
Sbjct: 619 KQPTSNVALTRPKPVRTATSQSKIPKPV---KHIPSDSNNLDPQLGPWRFANP 668


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,348,266
Number of Sequences: 5004
Number of extensions: 70169
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)