Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1089
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142 30 2.5
03_04_0006 + 16257288-16259522 30 2.5
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 2.5
03_02_0763 - 10977793-10978092,10978896-10978996,10979580-109796... 29 3.2
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351... 29 4.3
06_03_0854 + 25400855-25403741,25406174-25407708 29 4.3
09_03_0143 - 12723640-12723935,12723959-12724310 29 5.7
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 5.7
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 7.5
03_02_0582 + 9624481-9626844 28 7.5
12_02_0077 - 13288916-13289659,13289689-13289691 28 9.9
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 28 9.9
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647... 28 9.9
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 28 9.9
>10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142
Length = 407
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/84 (26%), Positives = 35/84 (41%)
Frame = -2
Query: 658 ELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNKHRAPADIID 479
E GH + + D N PGS + +H+ VLN + R A++ R D ++
Sbjct: 313 ETQAGHWQNGVLDTLSTQNIIPGSPIAVNHSKVLNAVQEARRAAE-RAYDVPRVD-DKVN 370
Query: 478 RAPLPPNRVSNETMKVVVFQRRSR 407
RA N+ +N V + R
Sbjct: 371 RAVASANKAANAARVAAVKAAQKR 394
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -3
Query: 408 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 256
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 226 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 125
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>03_02_0763 -
10977793-10978092,10978896-10978996,10979580-10979648,
10979787-10979857,10979946-10980100,10980348-10980477,
10980946-10981013,10981335-10981592
Length = 383
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 604 NSPPGSVLEPDHAGVL--NGDERFRHVTTLHAWNKH 503
N+ PG + +H NG +RF H+ L++WN H
Sbjct: 182 NAIPGRLYGGNHIDNADGNGGDRFGHLVDLYSWNPH 217
>10_08_0267 - 16333239-16333820,16333904-16334842,16334920-16335172,
16336837-16337063,16338189-16339388
Length = 1066
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -1
Query: 644 TPALFFDRCTAPVKLPAWQCPRTGSRGS-FKRRRAFPPRHHSARLEQTP 501
+PA +R APV WQC GS + R R P R E+TP
Sbjct: 912 SPAPPENRTKAPVPPAGWQCRHCGSTETPLWRERDGPAEAEHVRKEETP 960
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 408 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 283
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>09_03_0143 - 12723640-12723935,12723959-12724310
Length = 215
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 643 HLRYSLTDVPPQSN--SPPGSVLEPDHAGVLNGDERFRHVTTLHAWNKH 503
H+R +LTD+P N SP G ++E D A + N V T HA H
Sbjct: 84 HVRLTLTDIPVPFNDPSPAGPLIEMD-AKMANA---IADVNTFHAMEAH 128
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 537 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 626
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 616 PPQSNSPPGSVLEPDHAGVLNGDE 545
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>03_02_0582 + 9624481-9626844
Length = 787
Score = 28.3 bits (60), Expect = 7.5
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = -1
Query: 629 FDRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLEQTPCARRYYRPRTASAQPSK 450
FDR +P++ A PR+G G + + P + LEQ+P + T AQ K
Sbjct: 11 FDRRPSPME-EAEGLPRSGYLGQLHHHQYYQPHSNMLPLEQSPPTSTKHTSVTL-AQLLK 68
Query: 449 **NNESSGFSATIA 408
N+ SG S I+
Sbjct: 69 RVNDARSGSSTPIS 82
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 351 ESSSTGSSFPADSPKPVPLAVVSLDSR 271
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 7 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCS 135
C T RS N H + CL+ +H G NVI +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284
>04_04_0433 +
25163111-25163471,25163943-25164154,25164420-25164701,
25164794-25164916,25165511-25165664,25165754-25165965,
25166143-25166212,25166294-25166424
Length = 514
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 7 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 135
CT++ +R A W G G L HC P V+S +CS
Sbjct: 26 CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -3
Query: 381 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 274
PL+ P AR SSTGSSFP S P ++ L S
Sbjct: 47 PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,592,061
Number of Sequences: 37544
Number of extensions: 540981
Number of successful extensions: 1681
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1679
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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