Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1089
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   2.9  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   2.9  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    28   8.9  

>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 40  WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 171
           W+  G   C+ + K CDG + C       QCS+     +   AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 40  WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 171
           W+  G   C+ + K CDG + C       QCS+     +   AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 423  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 304
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 423  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 304
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -2

Query: 544 RFRHVTTLHAWN-KHRAPADIIDRAPLPPNRVSNETMKVVVFQRR-SRETISH 392
           +F  +   HAW  + RAP  II R P     +  + M  +  QR+ SR ++ H
Sbjct: 545 QFSRIEHTHAWTCQTRAPTTIILRCPAAAQLLEAQEMTELQHQRQSSRYSVRH 597


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 26/79 (32%), Positives = 39/79 (49%)
 Frame = +2

Query: 272 LLSSETTAKGTGLGESAGKEDPVELDSSLAL*GDMRGVA*VGDRFARSSLKNHYFHCFIT 451
           + S  TT+    + +S+  ++   LD   AL G +R VA + DR  R SLKN     F+T
Sbjct: 32  IFSLATTSAARYVSDSSA-DNTTRLDE--ALNGMIRYVADM-DRATRLSLKNQQLKEFLT 87

Query: 452 YSVGRKRCAVDNIGGRTVF 508
           Y+      +  NI  R+ F
Sbjct: 88  YTPVILNASTTNIVTRSKF 106


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -3

Query: 420 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 304
           +DD   R P + +     L  PY +   SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,929,897
Number of Sequences: 27780
Number of extensions: 414694
Number of successful extensions: 1207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)