Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1089
(797 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62370.1 68416.m07006 expressed protein 31 1.2
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot... 29 3.6
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 29 4.7
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 29 4.7
At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family p... 28 6.2
At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family p... 28 6.2
At4g35240.1 68417.m05009 expressed protein contains Pfam domains... 28 6.2
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 8.3
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote... 28 8.3
>At3g62370.1 68416.m07006 expressed protein
Length = 361
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 604 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWNKH 503
N+ PG + P G NG +RF H+ ++AWN H
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWNPH 195
>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
similar to SP|P22418 Fructose-1,6-bisphosphatase,
chloroplast precursor (EC 3.1.3.11)
(D-fructose-1,6-bisphosphate 1-phosphohydrolase)
(FBPase) {Spinacia oleracea}; contains Pfam profile
PF00316: fructose-1,6-bisphosphatase
Length = 404
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 387 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 277
A+ + SP+N+ L S SS +D P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -2
Query: 190 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 80
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 33 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -2
Query: 190 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 80
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 32 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68
>At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family
protein contains Pfam PF03208: PRA1 family protein
Length = 209
Score = 28.3 bits (60), Expect = 6.2
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Frame = -3
Query: 399 SPTYATPLMSPYN--ARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWEFVNPFMRVT- 229
SP A + P R SS + P+ V + SL S W + +RV+
Sbjct: 110 SPQLAAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSF-ALWYISSGLLRVSV 168
Query: 228 N*MTRHLATLRES*LLPPFTRACLNFFTLTFRALGRNH 115
+ HLAT+ + L P +A N F FRA+ RN+
Sbjct: 169 ALLIAHLATILHASLRTPNLKARFNTFREEFRAVWRNY 206
>At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family
protein contains Pfam PF03208: PRA1 family protein
Length = 209
Score = 28.3 bits (60), Expect = 6.2
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Frame = -3
Query: 399 SPTYATPLMSPYN--ARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWEFVNPFMRVT- 229
SP A + P R SS + P+ V + SL S W + +RV+
Sbjct: 110 SPQLAAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSF-ALWYISSGLLRVSV 168
Query: 228 N*MTRHLATLRES*LLPPFTRACLNFFTLTFRALGRNH 115
+ HLAT+ + L P +A N F FRA+ RN+
Sbjct: 169 ALLIAHLATILHASLRTPNLKARFNTFREEFRAVWRNY 206
>At4g35240.1 68417.m05009 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 828
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 390 YATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWEFVNPF 241
Y+ P+ P SSS ++ A P P P + R W+F+NPF
Sbjct: 239 YSNPVPGPGPGYYGSSSASTTAAATKPPPPPPS----PPRSNGWDFLNPF 284
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 481 DRAPLPPNRVSNETMKVVVFQRRSRET 401
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
beta-ketoacyl-CoA synthase - Simmondsia
chinensis,PID:g1045614
Length = 451
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 656 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFR*R 769
LS R W RAK L+Q+ TH+ E T+Y+S R
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,115,072
Number of Sequences: 28952
Number of extensions: 393549
Number of successful extensions: 1129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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