Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1088
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.72 
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    28   1.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.9  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   8.9  

>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 129 ARKIRGRPENAGPDPVRNVRRFSRV 55
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
 Frame = +1

Query: 58  SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
           ++ S+Y  +WI   VL+    +P + + +S +F   S     T++Q   +    Q  +  
Sbjct: 335 TKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNS-----TSIQEIFRRLGDQFSAMF 389

Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQARVNG 345
             K   HW    G+D M F  +  N+N  V +++Q +  G
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAG 429


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +3

Query: 390 LISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLA*L*SGIVRRHERCSISGRS 569
           L S AH+ ++++P VP  +   P P+  + E   G    +    S  VR H+    +G  
Sbjct: 749 LASLAHDDLDDLPAVPRIFSPPPLPKTPSGE--FGDNEFMFPKKSNRVRGHQSRPSTGSQ 806

Query: 570 FRAIV 584
            R +V
Sbjct: 807 LRNVV 811


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 375 GYLKRVIVTPAVYPRLLEFLHVDIQST 295
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,140,129
Number of Sequences: 5004
Number of extensions: 64455
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)