Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1088
(760 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5) 47 2e-05
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35) 36 0.036
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 29 3.1
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0) 29 3.1
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 29 3.1
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 29 3.1
SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37) 28 9.5
SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 28 9.5
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 28 9.5
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30) 28 9.5
SB_51109| Best HMM Match : ATP-cone (HMM E-Value=0.76) 28 9.5
SB_39271| Best HMM Match : Secretin_N (HMM E-Value=2.4) 28 9.5
SB_36990| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_31551| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37) 28 9.5
SB_27585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 28 9.5
SB_14634| Best HMM Match : ATP-synt_E (HMM E-Value=2.6) 28 9.5
SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_9508| Best HMM Match : Secretin_N (HMM E-Value=1.8) 28 9.5
>SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 59.3 bits (137), Expect = 3e-09
Identities = 35/67 (52%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Frame = -2
Query: 636 LPPNRVSNETMKVVVFQRR-SRETISHLCYTSHVSLQCQTRVKLTGSSFPADSPKPVPLA 460
LP +R+S +T++VVVF RR + T S + H + + TGSSFPAD KPVPLA
Sbjct: 67 LPLHRISKKTIRVVVFHRRIATPTYSTPLMSFH---RVRLESSSTGSSFPADCAKPVPLA 123
Query: 459 VVSLDSR 439
VVSLDSR
Sbjct: 124 VVSLDSR 130
>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 52.8 bits (121), Expect = 3e-07
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +3
Query: 378 MPRHLISDAHEWINEIPTVPIYYLAKP 458
MPRHLISDAHEWINEIPTVPI +P
Sbjct: 1 MPRHLISDAHEWINEIPTVPIIEFLQP 27
>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
Length = 167
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +1
Query: 295 SALNVNVKKFKQARVNGGSNYDSL 366
+ALNV VKKF QARVNGGSNYDSL
Sbjct: 28 AALNVKVKKFNQARVNGGSNYDSL 51
>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +1
Query: 298 ALNVNVKKFKQARVNGGSNYDSL 366
ALNV VKKF QARVNG SNYDSL
Sbjct: 2 ALNVKVKKFNQARVNGWSNYDSL 24
>SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +1
Query: 292 PSALNVNVKKFKQARVNGGSNYDS 363
PSALNV VKKF QARVNGG +S
Sbjct: 31 PSALNVKVKKFNQARVNGGDPLES 54
>SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)
Length = 521
Score = 35.9 bits (79), Expect = 0.036
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = -3
Query: 263 RAIQCFVLIRQSDSPCPCQF 204
R QCFVLI+QSDSP CQF
Sbjct: 63 RPSQCFVLIKQSDSPSHCQF 82
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -1
Query: 307 HSEHWAEITLRQHPRGPS 254
++EHWAEITLRQH PS
Sbjct: 48 NNEHWAEITLRQHRFRPS 65
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 31.5 bits (68), Expect = 0.77
Identities = 25/87 (28%), Positives = 37/87 (42%)
Frame = -2
Query: 681 GTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQCQTRVKLTG 502
G +H AP IID P +++ T KV V++ ++ T H S S Q + + T
Sbjct: 747 GFEHNAPQPIIDEGP-DTSQLRPRTSKVAVWE-TAQATTQHSESVSETSPQLSSTAQQTP 804
Query: 501 SSFPADSPKPVPLAVVSLDSR*GQWES 421
PA + SL +R W S
Sbjct: 805 PHSPATRHNARTSSPQSLATRHNAWTS 831
>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 31.5 bits (68), Expect = 0.77
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 199 LTVERRSYRIVPIAHETKPTRPYG*EDPRKA-GERGSGSSPKRKT 68
L+V R Y++VP++HE + R A +GSGSSP R T
Sbjct: 1038 LSVSGRCYKVVPLSHELCLVSKSLWNNRRSADNPKGSGSSPTRDT 1082
>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 29.5 bits (63), Expect = 3.1
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
++ SSY +WI V D+P R + +S +F S TA+Q + Q +
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS-----TAIQELFKRISEQFTAMF 389
Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
K HW G+D M F + N+N V +++Q
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 391
Score = 29.5 bits (63), Expect = 3.1
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
++ SSY +WI V D+P R + +S +F S TA+Q + Q +
Sbjct: 280 NKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS-----TAIQELFKRISEQFTAMF 334
Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
K HW G+D M F + N+N V +++Q
Sbjct: 335 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 369
>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 29.5 bits (63), Expect = 3.1
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
++ SSY +WI V D+P R + +S +F S TA+Q + Q +
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS-----TAIQELFKRISEQFTAMF 389
Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
K HW G+D M F + N+N V +++Q
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 740 SRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHR 636
SRG + PPR R E N+V PP S R
Sbjct: 293 SRGKREENSVSPPRRSKGRREENSVSPPRRSKGRR 327
>SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
Length = 732
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 555 ISGRSFRAIVAEKPLLSLFH 614
+ GR F I KPLLSLFH
Sbjct: 374 VFGRDFDIITDHKPLLSLFH 393
>SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 638
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 681 GTKHRAPADIIDRAPLPPNRV 619
GT HR PA+ R +P NRV
Sbjct: 519 GTHHRVPAEATGRVDVPDNRV 539
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -2
Query: 663 PADIIDRAPLPPNRVSNETMKVVVFQRRSRETI 565
PA + +++PLP N ++E +++ QRR E +
Sbjct: 2409 PAKLPNQSPLPNNASASEIQRILENQRREEELL 2441
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 555 ISGRSFRAIVAEKPLLSLFH 614
+ GR F I KPLLSLFH
Sbjct: 1317 VFGRDFDIITDHKPLLSLFH 1336
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 555 ISGRSFRAIVAEKPLLSLFH 614
+ GR F I KPLLSLFH
Sbjct: 79 VFGRDFDIITDHKPLLSLFH 98
>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 1280
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 555 ISGRSFRAIVAEKPLLSLFH 614
+ GR F I KPLLSLFH
Sbjct: 608 VFGRDFDIITDHKPLLSLFH 627
>SB_51109| Best HMM Match : ATP-cone (HMM E-Value=0.76)
Length = 250
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 681 GTKHRAPADIIDRAPLPPNRV 619
GT HR PA+ R +P NRV
Sbjct: 225 GTHHRVPAEATGRVDVPDNRV 245
>SB_39271| Best HMM Match : Secretin_N (HMM E-Value=2.4)
Length = 300
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 555 ISGRSFRAIVAEKPLLSLFH 614
+ GR F I KPLLSLFH
Sbjct: 259 VFGRDFDIITDHKPLLSLFH 278
>SB_36990| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 176 QNRADRARNETDTTLRLGRSAEGRRTRVR 90
+NRA RA + L+ R EGRRTR R
Sbjct: 52 ENRALRAHRKCGIILQAFRKFEGRRTRTR 80
>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1089
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 555 ISGRSFRAIVAEKPLLSLFH 614
+ GR F I KPLLSLFH
Sbjct: 568 VFGRDFDIITDHKPLLSLFH 587
>SB_31551| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
Length = 429
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 555 ISGRSFRAIVAEKPLLSLFH 614
+ GR F I KPLLSLFH
Sbjct: 347 VFGRDFDIITDHKPLLSLFH 366
>SB_27585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 555 ISGRSFRAIVAEKPLLSLFH 614
+ GR F I KPLLSLFH
Sbjct: 167 VFGRDFDIITDHKPLLSLFH 186
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 555 ISGRSFRAIVAEKPLLSLFH 614
+ GR F I KPLLSLFH
Sbjct: 773 VFGRDFDIITDHKPLLSLFH 792
>SB_14634| Best HMM Match : ATP-synt_E (HMM E-Value=2.6)
Length = 309
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 555 ISGRSFRAIVAEKPLLSLFH 614
+ GR F I KPLLSLFH
Sbjct: 167 VFGRDFDIITDHKPLLSLFH 186
>SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 555 ISGRSFRAIVAEKPLLSLFH 614
+ GR F I KPLLSLFH
Sbjct: 608 VFGRDFDIITDHKPLLSLFH 627
>SB_9508| Best HMM Match : Secretin_N (HMM E-Value=1.8)
Length = 391
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 555 ISGRSFRAIVAEKPLLSLFH 614
+ GR F I KPLLSLFH
Sbjct: 241 VFGRDFDIITDHKPLLSLFH 260
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,722,955
Number of Sequences: 59808
Number of extensions: 539267
Number of successful extensions: 1307
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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