Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1088
         (760 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X81649-1|CAA57309.1|  850|Homo sapiens gastric mucin protein.          33   1.1  
AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein.              33   1.1  
X00734-1|CAA25318.1|  444|Homo sapiens tubulin 5-beta protein.         31   4.5  
BC111374-1|AAI11375.1|  447|Homo sapiens TUBB6 protein protein.        31   6.0  
BC002654-1|AAH02654.1|  446|Homo sapiens tubulin, beta 6 protein.      31   6.0  
AK022340-1|BAB14016.1|  446|Homo sapiens protein ( Homo sapiens ...    31   6.0  

>X81649-1|CAA57309.1|  850|Homo sapiens gastric mucin protein.
          Length = 850

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 582 RSRETISHLCYTSHVSLQCQTRVKLTGSSFPADSPKP 472
           R+RE  S LCY   + +QC T +  + SS PA +  P
Sbjct: 453 RNREQASGLCYNYQIRVQCCTPLACSTSSSPAQTTPP 489


>AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein.
          Length = 2448

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 582  RSRETISHLCYTSHVSLQCQTRVKLTGSSFPADSPKP 472
            R+RE  S LCY   + +QC T +  + SS PA +  P
Sbjct: 1457 RNREQASGLCYNYQIRVQCCTPLPCSTSSSPAQTTPP 1493


>X00734-1|CAA25318.1|  444|Homo sapiens tubulin 5-beta protein.
          Length = 444

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
 Frame = +1

Query: 58  SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
           S+ SSY  +WI   V     D+P R + ++V+F   S     TA+Q   +    Q  +  
Sbjct: 335 SKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNS-----TAIQELFKRISEQFTAMF 389

Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
             K   HW    G+D M F  +  N+N  V +++Q
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424


>BC111374-1|AAI11375.1|  447|Homo sapiens TUBB6 protein protein.
          Length = 447

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
 Frame = +1

Query: 58  SRKSSYVSDWIRTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQNWHGQGESDCL 237
           ++ SSY  +WI   V     D+P R +   S    ++       +R ++ +         
Sbjct: 335 NKNSSYFVEWIPNNVKVAVCDIPPRGLKMASTFIGNSTAIQELFKRISEQFSAMFRRKAF 394

Query: 238 IKTKHWMALAGVDAM*FLPSALNVN-----VKKFKQARVNGG 348
           +   HW    G+D M F  +  N+N      ++++ A VN G
Sbjct: 395 L---HWFTGEGMDEMEFTEAESNMNDLVSEYQQYQDATVNDG 433


>BC002654-1|AAH02654.1|  446|Homo sapiens tubulin, beta 6 protein.
          Length = 446

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
 Frame = +1

Query: 58  SRKSSYVSDWIRTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQNWHGQGESDCL 237
           S+ SSY  +WI   V     D+P R +   S    ++       +R ++ +         
Sbjct: 335 SKNSSYFVEWIPNNVKVAVCDIPPRGLKMASTFIGNSTAIQELFKRISEQFSAMFRRKAF 394

Query: 238 IKTKHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
           +   HW    G+D M F  +  N+N  V +++Q
Sbjct: 395 L---HWFTGEGMDEMEFTEAESNMNDLVSEYQQ 424


>AK022340-1|BAB14016.1|  446|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12278 fis, clone MAMMA1001735, highly similar to
           TUBULIN BETA-5 CHAIN. ).
          Length = 446

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
 Frame = +1

Query: 58  SRKSSYVSDWIRTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQNWHGQGESDCL 237
           S+ SSY  +WI   V     D+P R +   S    ++       +R ++ +         
Sbjct: 335 SKNSSYFVEWIPNNVKVAVCDIPPRGLKMASTFIGNSTAIQELFKRISEQFSAMFRRKAF 394

Query: 238 IKTKHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
           +   HW    G+D M F  +  N+N  V +++Q
Sbjct: 395 L---HWFTGEGMDEMEFTEAESNMNDLVSEYQQ 424


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,794,408
Number of Sequences: 237096
Number of extensions: 2467990
Number of successful extensions: 4875
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4791
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)