Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1088
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.4  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   5.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   5.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   5.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.4  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   5.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   5.4  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   7.2  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   7.2  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 580 SSLKNHYFHCFITYSVGRK 636
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 180 RTESCRSRTKRNRHD 136
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 180 RTESCRSRTKRNRHD 136
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 180 RTESCRSRTKRNRHD 136
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 180 RTESCRSRTKRNRHD 136
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 180 RTESCRSRTKRNRHD 136
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 180 RTESCRSRTKRNRHD 136
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 180 RTESCRSRTKRNRHD 136
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 559 VGDRFARSSLKNHYFHCFI 615
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 559 VGDRFARSSLKNHYFHCFI 615
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,613
Number of Sequences: 438
Number of extensions: 4991
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)