Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1087
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    32   0.079
SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.9  

>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 32.3 bits (70), Expect = 0.079
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 610 NSNVKKI*DLWSVHWCQVMCVSSTTILYHLIDNTDFKIKAVGINY 744
           N N+ K    W +HW   +  +    LYH +    F I A+G+++
Sbjct: 611 NYNIGKFVVAWLLHWAPYILETDRVFLYHYLPALYFGIAALGVSW 655


>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 304 LRGNEYEISFNMYSELTFTQLHSSAFKFSEGFYKCINLTECTL 432
           +RGN+Y +    Y +         A++ S  F KC +L E  L
Sbjct: 177 VRGNDYNLGKLKYDKNAKKLRFEIAYQGSSSFIKCFDLNEVEL 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,595,428
Number of Sequences: 5004
Number of extensions: 47387
Number of successful extensions: 81
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)