Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1085
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    22   3.7  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   4.9  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   4.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   4.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   4.9  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   8.6  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   8.6  

>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 330 TLLMACRCDSNTAQYERNRSF-GHLVLHSAERPVVRSYHPRDYA 202
           T  + C+C      + R     GH+  H+ E+P   +Y  R +A
Sbjct: 3   THTLPCKCTICPKAFSRPWLLQGHIRTHTGEKPFSCTYCNRAFA 46


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 249 SAERPVVRSYHPRDY 205
           SA  P+VRSY P  Y
Sbjct: 281 SAATPLVRSYAPERY 295


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 244 RAAGGAKLPSAGLC 203
           ++  G ++PSAGLC
Sbjct: 99  KSCQGCEMPSAGLC 112


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 244 RAAGGAKLPSAGLC 203
           ++  G ++PSAGLC
Sbjct: 47  KSCQGCEMPSAGLC 60


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 244 RAAGGAKLPSAGLC 203
           ++  G ++PSAGLC
Sbjct: 230 KSCQGCEMPSAGLC 243


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 100 SRVSQSKRETRRRSPFGSRRSTPS 29
           S+++ S  +  R+SP   R S+PS
Sbjct: 53  SQITNSTLDPGRKSPSSPRISSPS 76


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 438 HRRIKKQRRYERLAATSQLSLW*LSGTSC*KLFI 539
           ++R   Q  YE+L     L LW   G S  KL +
Sbjct: 231 YKRPHDQWAYEKLNVNDGLQLWVDYGCSPKKLIV 264


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,976
Number of Sequences: 336
Number of extensions: 3129
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)