Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1085
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    29   0.74 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.3  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    27   3.0  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   6.9  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   6.9  
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    25   9.1  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    25   9.1  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   9.1  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   9.1  

>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 21  KNTDGVDLRDPNGLRRRVSRFDCE 92
           KN D    RDPN LR R+++FD +
Sbjct: 554 KNLDVTFRRDPNTLRPRINKFDSQ 577


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 93   TRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAARPSAE 257
            + ++ S   EPP     +  +S P S   A+ L      P   S APP   PSA+
Sbjct: 976  SNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSAD 1030


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = -2

Query: 256 SALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSQSKR 77
           S L  ++    L S G    +S   +++   GK+   V P  +      DF + +S+S+ 
Sbjct: 286 STLDASSSNTSLASTGPMTVSS---STVERKGKEASEVNPNSTSSVTFSDFAAAISRSRC 342

Query: 76  ETRRRSPFGSRRSTP 32
              ++S  G  R  P
Sbjct: 343 SRCKKSKKGCDRQRP 357


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 568  SPYAY*TSGSSQLLPFCSTRGF 633
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 238 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 113
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 391 NPTLGEFCFAMIGRADIEGSKSNV-AMNAWLPQASYPCGNFLAPLA 525
           NP    F  AM+  A  EGS +N    N  +PQA+ P  N +   A
Sbjct: 114 NPDFANFFQAMLQSAK-EGSDTNFQGENEQIPQATAPLKNLVEKYA 158


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 257 FCTRPSGRWCEATIRGIMPE 198
           FCT   GRWC       +PE
Sbjct: 261 FCTTLDGRWCHTICAIAIPE 280


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 512 WHLLLKTLYTKGSIGRAFAVPMRTEH 589
           +H + + L   GSI   FAVP++ EH
Sbjct: 398 FHGIAELLEILGSIINGFAVPLKEEH 423


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 258 PNVRNCGSSRTEQYYYRNDKPSVG 329
           P V N GSSRT+ +Y R    + G
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAG 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,296
Number of Sequences: 5004
Number of extensions: 54117
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)