Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1085
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287... 38 0.009
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 30 1.3
06_02_0173 - 12601025-12601071,12601632-12601698,12601857-126019... 30 1.8
06_01_0655 + 4742267-4742531,4743313-4744136 29 2.3
09_06_0332 + 22382508-22383214,22383576-22383631,22383673-223840... 29 3.1
07_03_0414 + 17892133-17893590 29 3.1
03_05_0183 - 21681673-21682524 29 3.1
09_04_0235 + 15904891-15905218,15906732-15907594 29 4.1
08_01_1078 + 11045555-11045673,11045940-11045991,11046230-110462... 29 4.1
07_03_0846 - 21983581-21986055 29 4.1
08_02_1485 - 27466761-27467753 28 5.4
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 28 7.1
01_06_1164 - 35026345-35026954,35027853-35027939,35028120-350284... 28 7.1
01_05_0118 + 18335065-18335553 28 7.1
01_01_1235 - 10017728-10017766,10018891-10019352 28 7.1
07_03_0626 + 20060013-20060273,20061017-20061274 27 9.4
01_06_1501 + 37804029-37804600,37804626-37805388 27 9.4
>09_04_0593 -
18825741-18826702,18826994-18827875,18828687-18828775,
18828942-18829080,18829405-18829531,18829629-18829838
Length = 802
Score = 37.5 bits (83), Expect = 0.009
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = -2
Query: 289 VREEPQFRTFGSALGRAAGGAKLP-SAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 113
+++EP+FR F + R G A P +AG+ N + A +++++S K + E SG
Sbjct: 691 IKDEPEFRAFTGSGNRLDGKASKPLAAGISSNPAAASSAISDSNK-KVNQETAASG---- 745
Query: 112 CDFTSRVSQSKRETRRRSPFGSRRSTPS 29
VS S R+ + + FGS +S+ S
Sbjct: 746 ------VSNSTRQKKGKLVFGSNKSSSS 767
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -2
Query: 181 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSQSKRETRRRSPFGS 47
A+ A +GK + E E S+QCD T + S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>06_02_0173 -
12601025-12601071,12601632-12601698,12601857-12601934,
12602235-12602396,12603309-12603440,12604604-12604656,
12605808-12606372
Length = 367
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +3
Query: 105 KSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAARPSAEPNVRNCGS- 281
KS L+P G+ ++ L A + ++H P + PAA + P VR G
Sbjct: 22 KSGALQPQPPHGAAAAVRL---AYTHDGIAVYKHTPPPPVYQTPAAVAAPSPPVRGNGGA 78
Query: 282 -SRTEQYYYRNDKP 320
+ EQ+ + +P
Sbjct: 79 PASAEQHKRKRGRP 92
>06_01_0655 + 4742267-4742531,4743313-4744136
Length = 362
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Frame = +3
Query: 39 DLRDPN-GLRRRVSRFDCETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 215
++RDP G+R + F+ +++ E RG ++ PD A +AS R +
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVASQ----RSHAE 184
Query: 216 DGSFAPPAARPSAEPNVRNCGSS---RTEQYYY 305
S PA +P V + G+ T Y Y
Sbjct: 185 PSSMNMPAFSIEEKPAVMSAGNKTMYNTNAYAY 217
>09_06_0332 +
22382508-22383214,22383576-22383631,22383673-22384004,
22384395-22384445
Length = 381
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = +3
Query: 123 PPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAARPSAEPNVRNCGSSRTEQYY 302
P + + +++ +P A + A + P DGS PP + A +R+ T Q +
Sbjct: 284 PVEQQPQSIAQHIPGPWSPAQSPNAIGYRPPDGSMPPPYSPGHAGAPIRSSVFMHTPQQF 343
Query: 303 YRNDKPSV 326
+P V
Sbjct: 344 AMPSRPGV 351
>07_03_0414 + 17892133-17893590
Length = 485
Score = 29.1 bits (62), Expect = 3.1
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +1
Query: 241 LGRVQNQMSETAVPLVLSSITIATTSHQ*GKTNLSHDGLIPAHVPF*WVNNPTL-GEFCF 417
L + Q + V + L S+T+ + T H GL+ A PF WV P + G
Sbjct: 273 LAWLDGQADGSVVYVSLGSLTVISLEQF---TEFLH-GLVAAGYPFLWVLRPDMVGASQS 328
Query: 418 AMIGRADIEGSKSNVAMNAWLPQ 486
A + A KS + W PQ
Sbjct: 329 AALREAVAAAGKSKARVVEWAPQ 351
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 479 SQAFIATLLFDPSMSALPIIAKQNSPS 399
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>09_04_0235 + 15904891-15905218,15906732-15907594
Length = 396
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 39 DLRDPN-GLRRRVSRFDCETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 215
++RDP+ G+R + ++ +++ E RG ++ PD +A L ++
Sbjct: 150 EIRDPSKGVRVWLGTYNTAEEAARAYDAEARKIRGKKAKVNFPDEPAVAQKLSLKQNAAK 209
Query: 216 DGSFAPP 236
APP
Sbjct: 210 QEKLAPP 216
>08_01_1078 +
11045555-11045673,11045940-11045991,11046230-11046279,
11047286-11047439,11048266-11048391
Length = 166
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 289 VREEPQFRTFGSALGRAA--GGAKLPSAGLCLNASKAEASLAESGKDML 149
+RE FG+ LGRAA GG++ G L AS +A L + G + +
Sbjct: 12 LRESNDDAAFGNGLGRAAPSGGSRWRQGGWHLGASAVDA-LVDRGSEFI 59
>07_03_0846 - 21983581-21986055
Length = 824
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +3
Query: 39 DLRDPNGLRRRVSRFDCETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 188
DL+D G +R C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>08_02_1485 - 27466761-27467753
Length = 330
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 123 PPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAARP 248
PP + G +S +P A LA++L + NPA P + P
Sbjct: 39 PPSATGPVLSRDVPLDASLATSLRLYLPNPASPPPPPTSKLP 80
>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -3
Query: 186 PKPA*PNPARICSLWSPESREALNNVTLLVAFRNQNARRDV 64
P P+ P+ R+ SL P ++V+L+ FRN A+RD+
Sbjct: 899 PPPSSPSVRRVRSL--PARHAGCDDVSLVEKFRNAMAKRDL 937
>01_06_1164 - 35026345-35026954,35027853-35027939,35028120-35028493,
35037372-35038586,35038659-35039316,35039331-35041012
Length = 1541
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 132 SRGSTVSISLPDSAR-LASALEAFRHNPADGSFAPPAARPSAEPNV 266
SR TV +S+ SA AS + PAD + +PP R + E NV
Sbjct: 1262 SRAFTVCLSIMASASPSASPPQPDETPPADSAVSPPPPRAAREDNV 1307
>01_05_0118 + 18335065-18335553
Length = 162
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -2
Query: 172 AESGKDMLTVEPRESGGSKQCDFTSRVSQSKRETRRRSPFGSRRST 35
A+ G + V P +GG+++ + +++ K T RR+ FG+R +
Sbjct: 18 AQDGHRLPDVAPA-AGGTREPEHARLIARRKESTYRRTAFGNREGS 62
>01_01_1235 - 10017728-10017766,10018891-10019352
Length = 166
Score = 27.9 bits (59), Expect = 7.1
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = -2
Query: 247 GRAAGGAKLPSAGLCLNASKAEASLAESGKDM--LTVEPR---ESGGSKQCDFTSRVSQS 83
G GGA + + L+A+ L G + L + PR S + TS + S
Sbjct: 66 GEDGGGAGVRACSSDLSAAAFADELFREGALLRPLKLPPRLQTPSASAAASAATSPTAAS 125
Query: 82 KRETRRRSPFGSRRS 38
K + RSPF SRRS
Sbjct: 126 KAASSSRSPFASRRS 140
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 169 RLGWLRP*RRSGIIP 213
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>01_06_1501 + 37804029-37804600,37804626-37805388
Length = 444
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +3
Query: 141 STVSISLPDSARLASALEAFRHNPADGSFAPPAARPSAEPNVRNCGSSRTEQYYYRN 311
ST ++ +A AL HNP +F P ++P R SS Y++ N
Sbjct: 37 STARLAFFHAALYLLALAQGFHNPCSEAFGADQFAPPSDPGARASRSSYFNWYHFFN 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,457,400
Number of Sequences: 37544
Number of extensions: 401380
Number of successful extensions: 1317
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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