Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1085
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    31   0.64 
At5g08230.1 68418.m00965 PWWP domain-containing protein putative...    30   1.5  
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    30   1.5  
At4g27120.2 68417.m03898 expressed protein                             29   2.6  
At4g27120.1 68417.m03897 expressed protein                             29   2.6  
At2g22720.3 68415.m02692 expressed protein                             29   2.6  
At2g22720.2 68415.m02691 expressed protein                             29   2.6  
At2g22720.1 68415.m02693 expressed protein                             29   2.6  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.4  
At5g54730.1 68418.m06815 expressed protein                             28   4.5  
At4g01210.1 68417.m00159 glycosyltransferase family protein 1 co...    28   4.5  
At1g63480.1 68414.m07178 DNA-binding family protein contains a A...    28   6.0  
At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family...    28   6.0  
At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7) c...    28   6.0  
At1g14740.1 68414.m01762 expressed protein                             28   6.0  
At5g43320.1 68418.m05294 casein kinase, putative similar to case...    27   7.9  
At2g17510.1 68415.m02025 ribonuclease II family protein similar ...    27   7.9  

>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 491 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 384
           + C S + +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
            transcription factor (HUA2) - Arabidopsis thaliana,
            EMBL:AF116556
          Length = 1445

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 111  HCLEPPDSR-GSTVSISLPDSARLASALEAFRHNPADGSFAPPA 239
            HCL PP +      SI+LP S+    ++ +    P    FAPPA
Sbjct: 1162 HCLPPPTAPLAPAQSIALPPSSITRPSMPSHPSLPLQPGFAPPA 1205


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
            domain-containing protein / RNA recognition motif
            (RRM)-containing protein KIAA0122 gene , Homo sapiens,
            EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
            recognition motif. (a.k.a. RRM, RBD, or RNP domain),
            PF01585: G-patch domain, weak hit to PF00641: Zn-finger
            in Ran binding protein and others
          Length = 1105

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/77 (25%), Positives = 35/77 (45%)
 Frame = -2

Query: 265  TFGSALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSQ 86
            +FG  LG A+  A +    +  +AS A  S++ SG+   +  P      ++     + S 
Sbjct: 900  SFGGTLGGASSSASVQMPPILPSASPASVSVSGSGRRRFSETPTAGPTHRE---QPQTSY 956

Query: 85   SKRETRRRSPFGSRRST 35
              R   RR+ +GS  S+
Sbjct: 957  RDRAAERRNLYGSSTSS 973


>At4g27120.2 68417.m03898 expressed protein
          Length = 298

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = -2

Query: 289 VREEPQFRTFGSALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-Q 113
           V E PQ +   + + RA GG ++        AS + +++ E+G      +  E+GG++ +
Sbjct: 35  VAEPPQVQPREN-VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQAR 93

Query: 112 CDFTSRVSQSKRETRRRSPFGSRRS 38
                   + +RE +R++   +R S
Sbjct: 94  ASKKKEKKRQEREAQRQAEEATRES 118


>At4g27120.1 68417.m03897 expressed protein
          Length = 298

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = -2

Query: 289 VREEPQFRTFGSALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-Q 113
           V E PQ +   + + RA GG ++        AS + +++ E+G      +  E+GG++ +
Sbjct: 35  VAEPPQVQPREN-VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQAR 93

Query: 112 CDFTSRVSQSKRETRRRSPFGSRRS 38
                   + +RE +R++   +R S
Sbjct: 94  ASKKKEKKRQEREAQRQAEEATRES 118


>At2g22720.3 68415.m02692 expressed protein
          Length = 569

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 126 PDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAARPSAEPNVRNCGSSR 287
           P S GS +  S P ++R ASA    +  PA      PA+  S  P   + GS R
Sbjct: 277 PASSGSQMQNSRPQNSRPASAGSQMQQRPASSGSQRPASSGSQRP--ASSGSQR 328


>At2g22720.2 68415.m02691 expressed protein
          Length = 672

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 126 PDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAARPSAEPNVRNCGSSR 287
           P S GS +  S P ++R ASA    +  PA      PA+  S  P   + GS R
Sbjct: 380 PASSGSQMQNSRPQNSRPASAGSQMQQRPASSGSQRPASSGSQRP--ASSGSQR 431


>At2g22720.1 68415.m02693 expressed protein
          Length = 340

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 126 PDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAARPSAEPNVRNCGSSR 287
           P S GS +  S P ++R ASA    +  PA      PA+  S  P   + GS R
Sbjct: 48  PASSGSQMQNSRPQNSRPASAGSQMQQRPASSGSQRPASSGSQRP--ASSGSQR 99


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 613 RAKAGLIQMFSTHRDCESTAYRSFSIK 533
           RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 291 RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At5g54730.1 68418.m06815 expressed protein
          Length = 763

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 22/61 (36%), Positives = 34/61 (55%)
 Frame = +3

Query: 15  VKKNTDGVDLRDPNGLRRRVSRFDCETRLVKSHCLEPPDSRGSTVSISLPDSARLASALE 194
           +KKN DG   + P+G+   VSR    +    S+CL+   S  STV+ S   +A  +SA+E
Sbjct: 1   MKKNGDGSSPKSPDGV---VSRSARSSFRALSNCLKVISSGASTVARSAVSAA--SSAVE 55

Query: 195 A 197
           +
Sbjct: 56  S 56


>At4g01210.1 68417.m00159 glycosyltransferase family protein 1
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 981

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 500 VVTFWHLLLKTLYTKGSIGRAFAVPMRTEHLDQASFCPFAPRE 628
           VV F + LL  LYT+   G  + +P   E + +A    F P++
Sbjct: 282 VVVFHNYLLPILYTEFDAGNFYVIPGSPEEVCKAKNLEFPPQK 324


>At1g63480.1 68414.m07178 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 361

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 259 GSALGRAAGGAKLPSAGLCLNASKAEASLAESGKDML 149
           GS L    GG++  + GL ++ S+ + S+   G DML
Sbjct: 225 GSYLVNEEGGSRSRTGGLSVSLSRPDGSIIAGGVDML 261


>At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 217

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/69 (26%), Positives = 27/69 (39%)
 Frame = +3

Query: 123 PPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAARPSAEPNVRNCGSSRTEQYY 302
           PP    ST   + P  +  +S     R  P    FAPP +     P+  +   S +   Y
Sbjct: 46  PPLKLKSTPPSNSPSPSSSSSFFSESRSRPVS-PFAPPPSFKLKSPSDSDSNCSASPTPY 104

Query: 303 YRNDKPSVG 329
           +R+  P  G
Sbjct: 105 FRSSSPRAG 113


>At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7)
           contains Pfam profiles: PF05033: Pre-SET motif, PF00856
           SET domain; identical to cDNA SUVH7 (SUVH7) GI:13517754
          Length = 693

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 154 MLTVEPRESGGSKQCDFTSRVSQSKRETRRRSPFGSRRSTPS 29
           ++T+ P +   +  CD  +  S    +  R  P GS+ STP+
Sbjct: 103 LITIRPSDDSSNYSCDAGAGPSTGPVKRGRGRPKGSKNSTPT 144


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 232 GAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK--QCDFTSRVSQSKRETRRRS 59
           G +L  + LC N+ K   SL + GK+++T     S   K  + DF +    +   ++R++
Sbjct: 67  GNELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYDDKWVERDFFNLREMNPNSSKRKA 126


>At5g43320.1 68418.m05294 casein kinase, putative similar to casein
           kinase I (CKI2) [Arabidopsis thaliana]
           gi|1103322|emb|CAA55397; contains protein kinase domain,
           Pfam:PF00069
          Length = 480

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +3

Query: 174 RLASALEAFRHNPADGSFAPPA--ARPSAEPNVRNCGSSRTEQYYYRNDKP 320
           R + ALEA+      GS    A  +RP    NV       T Q Y R ++P
Sbjct: 340 RFSGALEAYARRNGSGSGVVQADRSRPRTSENVLASSKDTTPQNYERVERP 390


>At2g17510.1 68415.m02025 ribonuclease II family protein similar to
           SP|P37202 Mitotic control protein dis3
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF00773: RNB-like protein
          Length = 933

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 460 VAMNAWLPQASYPCGNFLAPLAK 528
           VA+++W  Q+ YP G+++ P+ K
Sbjct: 400 VAVDSWDRQSRYPSGHYVRPIGK 422


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,337,324
Number of Sequences: 28952
Number of extensions: 298937
Number of successful extensions: 835
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)