Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1084
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    94   1e-20
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    29   0.40 
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p...    27   2.1  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   6.5  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 93.9 bits (223), Expect = 1e-20
 Identities = 47/84 (55%), Positives = 54/84 (64%)
 Frame = -2

Query: 505 LFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFTGLSLN 326
           LFT+GGLTGVIL+NS +DI  HDTY+VVAHFHYVLS               P   GL  N
Sbjct: 354 LFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMFGLMYN 412

Query: 325 SYILKIQFFTIFIGVNITFFPQHF 254
             +  IQF+ +FIGVNI F PQHF
Sbjct: 413 ETLASIQFWILFIGVNIVFGPQHF 436



 Score = 29.1 bits (62), Expect = 0.40
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 257 FLGLAGIPRRYSDYPD 210
           FLGL G+PRR  DYP+
Sbjct: 436 FLGLNGMPRRIPDYPE 451


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 344 YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFLGL 246
           +RPF KFL  K  IF + YW +  +  T +LGL
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGL 232


>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 194 FMKYMSLDNLNIVEVFQLNLKMLWKKCYIYSNKYC 298
           +++  + +N  + EVFQL + +  KK + +S K C
Sbjct: 166 YVECSAKENTGVNEVFQLAVGLTIKKSFSFSKKSC 200


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -2

Query: 487 LTGVILANSSIDITLHDTYYVV 422
           L  ++LAN+++D T+H  Y+++
Sbjct: 657 LDHILLANATLDKTVHSAYWLM 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,525,247
Number of Sequences: 5004
Number of extensions: 24992
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)