Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1084
         (506 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42204-1|AAB50956.1|  855|Drosophila melanogaster putative potas...    28   8.3  
U36925-1|AAB50936.1|  855|Drosophila melanogaster seizure potass...    28   8.3  
AY058350-1|AAL13579.1|  855|Drosophila melanogaster GH12235p pro...    28   8.3  
AE013599-3790|AAF47148.1|  855|Drosophila melanogaster CG3182-PB...    28   8.3  
AE013599-3789|AAM68296.1|  855|Drosophila melanogaster CG3182-PA...    28   8.3  

>U42204-1|AAB50956.1|  855|Drosophila melanogaster putative
           potassium channel subunithomolog protein.
          Length = 855

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 163 EIYEPNEEIIFHEIYESG*SEYRRGIPAKPKNVVEKMLYLLQ*IL*KIE 309
           E+Y  N  I  +   +    E++R  PAK    VE+ L+ L   L KIE
Sbjct: 23  ELYMSNNNINDNAAKKPPVKEFKRNCPAKSNKFVERELFSLMCNLNKIE 71


>U36925-1|AAB50936.1|  855|Drosophila melanogaster seizure potassium
           channel protein.
          Length = 855

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 163 EIYEPNEEIIFHEIYESG*SEYRRGIPAKPKNVVEKMLYLLQ*IL*KIE 309
           E+Y  N  I  +   +    E++R  PAK    VE+ L+ L   L KIE
Sbjct: 23  ELYMSNNNINDNAAKKPPVKEFKRNCPAKSNKFVERELFSLMCNLNKIE 71


>AY058350-1|AAL13579.1|  855|Drosophila melanogaster GH12235p
           protein.
          Length = 855

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 163 EIYEPNEEIIFHEIYESG*SEYRRGIPAKPKNVVEKMLYLLQ*IL*KIE 309
           E+Y  N  I  +   +    E++R  PAK    VE+ L+ L   L KIE
Sbjct: 23  ELYMSNNNINDNAAKKPPVKEFKRNCPAKSNKFVERELFSLMCNLNKIE 71


>AE013599-3790|AAF47148.1|  855|Drosophila melanogaster CG3182-PB,
           isoform B protein.
          Length = 855

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 163 EIYEPNEEIIFHEIYESG*SEYRRGIPAKPKNVVEKMLYLLQ*IL*KIE 309
           E+Y  N  I  +   +    E++R  PAK    VE+ L+ L   L KIE
Sbjct: 23  ELYMSNNNINDNAAKKPPVKEFKRNCPAKSNKFVERELFSLMCNLNKIE 71


>AE013599-3789|AAM68296.1|  855|Drosophila melanogaster CG3182-PA,
           isoform A protein.
          Length = 855

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 163 EIYEPNEEIIFHEIYESG*SEYRRGIPAKPKNVVEKMLYLLQ*IL*KIE 309
           E+Y  N  I  +   +    E++R  PAK    VE+ L+ L   L KIE
Sbjct: 23  ELYMSNNNINDNAAKKPPVKEFKRNCPAKSNKFVERELFSLMCNLNKIE 71


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,957,083
Number of Sequences: 53049
Number of extensions: 223583
Number of successful extensions: 500
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1825511424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)