Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1083
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   2.3  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    27   3.0  
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    26   6.9  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    26   6.9  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    25   9.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.1  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    25   9.1  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +2

Query: 260  NSIYSEDEARYTIHNQQDEYLQLP*KQLQSITHALSYVERIRK 388
            N +Y E    Y IHN+ ++ +++  + + S+  A  Y E + +
Sbjct: 1058 NGLYEEAFRIYKIHNKHEQAMKVLVEDIVSLDRAQDYAETVEQ 1100


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +3

Query: 231 KPRRLQL*SVIVSIPRTRPGIPFTIN----KMNTYNFRKNNYSPLLMPYPTSKESENIIS 398
           KP  ++  + ++SI +  P  P  +     +   ++  ++ +SP+L+ Y   +  +NI+ 
Sbjct: 696 KPGSVEAVNAVISIAKANPTFPIVLQWTGGRAGGHHSFEDFHSPILLTYSAIRRCDNIVL 755

Query: 399 V 401
           +
Sbjct: 756 I 756


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 266 IYSEDEARYTIHNQQDEYLQL 328
           IY +DE + T+H  Q  Y++L
Sbjct: 257 IYVDDETKLTLHGLQQHYVKL 277


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 94  RLFGYDIDGVIYTTDSDYEHKNGSILFRDEILEEH 198
           +L   +I+G  +TT  D  +K  S+ F D I   H
Sbjct: 62  KLLRKEIEGSFFTTPKDLVNKIASLCFEDVIDTSH 96


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 626 GKSPSSLPVI*RSILQKRFSSNEKAMTAS 540
           GK P S P + +S     FSSNE+++ +S
Sbjct: 215 GKIPESKPSVYKSRASNLFSSNEQSIHSS 243


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 572  NVSGGSNVKSLEANLGTFPIPQS 640
            +VS GSNV S+E    T P+  S
Sbjct: 1409 SVSSGSNVSSIEDETSTMPLKAS 1431


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 210 NSKEFGSKPRRLQL*SVIVSIPRTRPGIPFTINKMNTYNFRKNNYSPL 353
           N+ +F  K R LQ     VSI +     PF +N +N +++  N +  L
Sbjct: 325 NAAKFTGKERHLQE----VSILQRLQACPFVVNLVNVWSYNDNIFLQL 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,363,564
Number of Sequences: 5004
Number of extensions: 75841
Number of successful extensions: 201
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)