Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1083
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0680 - 24238840-24241242                                         31   1.3  
08_02_0800 + 21330446-21330722,21331040-21331182,21331925-213319...    30   1.8  
08_01_0918 + 9043949-9045625                                           29   4.1  
03_03_0041 - 14007687-14009381                                         29   4.1  
04_03_0965 - 21296608-21297165,21297332-21297682,21297781-212979...    29   5.4  

>01_05_0680 - 24238840-24241242
          Length = 800

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 103 GYDIDGVIYTTDSDYEHKNGSILFRDEILEEHEKFLIQKNLVPNHVAF 246
           G D+D   YTT  D   K+G++ F  ++  E    ++ K  +P+H+ F
Sbjct: 661 GIDLDTATYTTLIDGFSKDGNVTFALKLYSE----MVAKGNIPDHITF 704


>08_02_0800 +
           21330446-21330722,21331040-21331182,21331925-21331978,
           21332065-21332130,21333075-21333096,21333347-21333460,
           21334153-21334278,21334891-21334925,21335709-21335809,
           21335911-21335971,21336482-21336572,21337657-21337842,
           21338755-21338922,21339006-21339208,21339313-21339431,
           21339910-21339928,21340092-21340130,21340238-21340465,
           21340987-21341088,21341842-21341889,21343622-21343765,
           21343873-21343968,21344224-21344325,21345188-21345274
          Length = 876

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
 Frame = +2

Query: 188 WKNTKSF*FKRIWFQTTSPS----IIKC-NSIYSEDEARYTI 298
           WK  K F F R WF+    +     +KC NS YS    RYT+
Sbjct: 343 WKTKKDFVFSRQWFRGQDGAYRQLAVKCVNSTYSSRLPRYTL 384


>08_01_0918 + 9043949-9045625
          Length = 558

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +1

Query: 103 GYDIDGVIYTTDSDYEHKNGSILFRDEILEEHEKFLIQKNLVPNHVAFNYKV**YLFRG 279
           G + D V YT+  DY  KNG  +   +IL+     +I++ L PN + ++  +  Y  +G
Sbjct: 306 GVEPDAVTYTSLMDYLCKNGRCIEARKILDS----MIKRGLKPNVITYSTLLHGYATKG 360


>03_03_0041 - 14007687-14009381
          Length = 564

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 94  RLFGYDIDGVIYTTDSDYEHKNGSILFRDEILEEHEKFLIQKNLVPNHVAF 246
           +L GY++D V YTT  D   K G I    +I  E    ++ K + PN  A+
Sbjct: 282 KLRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNE----MVDKGMEPNEYAY 328


>04_03_0965 -
           21296608-21297165,21297332-21297682,21297781-21297965,
           21298076-21298172,21298859-21299071,21299206-21299334,
           21299442-21299567,21301280-21301999
          Length = 792

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 729 SYFSKYLN*CTNVSFGLFLYLITFSAYSKMDCGI 628
           S+ SK    C N++  LFL   T++    M+CG+
Sbjct: 603 SFLSKASENCFNITLALFLTYNTYNFVEYMECGL 636


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,886,486
Number of Sequences: 37544
Number of extensions: 420851
Number of successful extensions: 944
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)