Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1083
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)                     29   3.2  
SB_28059| Best HMM Match : DUF149 (HMM E-Value=0.71)                   29   3.2  
SB_39685| Best HMM Match : ANTH (HMM E-Value=1.5e-11)                  28   7.3  
SB_39817| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 621 LSLYRNPFYCTLKTL*DTGKVRTRHLYINSDILKNTKISQRSGQDVTGI 767
           +SL+ NPF C  K       +RTR L  + +++K +     +GQ VT +
Sbjct: 265 VSLHNNPFVCDCKLSWLKQWIRTRSLIYSLNLIKCSSPPGLAGQPVTAV 313


>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
          Length = 2114

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 690  RHLYINSDILKNTKISQRSGQDVTG 764
            +HLY  + I + TK + R GQD+TG
Sbjct: 1538 KHLYKKARIGRKTKKANRKGQDITG 1562


>SB_28059| Best HMM Match : DUF149 (HMM E-Value=0.71)
          Length = 1043

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 690 RHLYINSDILKNTKISQRSGQDVTG 764
           +HLY  + I + TK + R GQD+TG
Sbjct: 452 KHLYKKARIGRKTKKANRKGQDITG 476


>SB_39685| Best HMM Match : ANTH (HMM E-Value=1.5e-11)
          Length = 523

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 351 LLMPYPTSKESENIISVYKTVEEAVKGTG 437
           +L P   S  + N+IS  +  EE++KGTG
Sbjct: 480 VLQPVAASNAAPNLISQRQAEEESIKGTG 508


>SB_39817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 351 LLMPYPTSKESENIISVYKTVEEAVKGTG 437
           +L P   S  + N+IS  +  EE++KGTG
Sbjct: 461 VLQPVAASNAAPNLISQRQAEEESIKGTG 489


>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1995

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 106  YDIDGVIYTTDSDYEHKNGSILFRDEILEEHEKFLIQK 219
            YDI GV    D  Y+H    +L   E LE+   +L ++
Sbjct: 1127 YDIQGVCNDVDCAYQHLTDYMLTETETLEDLASYLSEE 1164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,159,856
Number of Sequences: 59808
Number of extensions: 535506
Number of successful extensions: 1272
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)