Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1083
         (775 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D80009-1|BAA11504.2| 1285|Homo sapiens KIAA0187 protein.               31   3.5  
BC150252-1|AAI50253.1| 1282|Homo sapiens BMS1 homolog, ribosome ...    31   3.5  
BC043345-1|AAH43345.1| 1282|Homo sapiens BMS1 homolog, ribosome ...    31   3.5  
AL022344-4|CAI23617.1| 1282|Homo sapiens BMS1-like, ribosome ass...    31   3.5  

>D80009-1|BAA11504.2| 1285|Homo sapiens KIAA0187 protein.
          Length = 1285

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 23/67 (34%), Positives = 36/67 (53%)
 Frame = +1

Query: 58  CVRIKYERTHYWRLFGYDIDGVIYTTDSDYEHKNGSILFRDEILEEHEKFLIQKNLVPNH 237
           C+  K E+  Y  L G  + GV+Y  D+ Y    GS +F+DE+   HE  L+Q +L+  H
Sbjct: 330 CLNEK-EKLVYAPLSG--VGGVLYDKDAVYVDLGGSHVFQDEVGPTHE--LVQ-SLISTH 383

Query: 238 VAFNYKV 258
              + K+
Sbjct: 384 STIDAKM 390


>BC150252-1|AAI50253.1| 1282|Homo sapiens BMS1 homolog, ribosome
           assembly protein (yeast) protein.
          Length = 1282

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 23/67 (34%), Positives = 36/67 (53%)
 Frame = +1

Query: 58  CVRIKYERTHYWRLFGYDIDGVIYTTDSDYEHKNGSILFRDEILEEHEKFLIQKNLVPNH 237
           C+  K E+  Y  L G  + GV+Y  D+ Y    GS +F+DE+   HE  L+Q +L+  H
Sbjct: 327 CLNEK-EKLVYAPLSG--VGGVLYDKDAVYVDLGGSHVFQDEVGPTHE--LVQ-SLISTH 380

Query: 238 VAFNYKV 258
              + K+
Sbjct: 381 STIDAKM 387


>BC043345-1|AAH43345.1| 1282|Homo sapiens BMS1 homolog, ribosome
           assembly protein (yeast) protein.
          Length = 1282

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 23/67 (34%), Positives = 36/67 (53%)
 Frame = +1

Query: 58  CVRIKYERTHYWRLFGYDIDGVIYTTDSDYEHKNGSILFRDEILEEHEKFLIQKNLVPNH 237
           C+  K E+  Y  L G  + GV+Y  D+ Y    GS +F+DE+   HE  L+Q +L+  H
Sbjct: 327 CLNEK-EKLVYAPLSG--VGGVLYDKDAVYVDLGGSHVFQDEVGPTHE--LVQ-SLISTH 380

Query: 238 VAFNYKV 258
              + K+
Sbjct: 381 STIDAKM 387


>AL022344-4|CAI23617.1| 1282|Homo sapiens BMS1-like, ribosome
           assembly protein (yeast) protein.
          Length = 1282

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 23/67 (34%), Positives = 36/67 (53%)
 Frame = +1

Query: 58  CVRIKYERTHYWRLFGYDIDGVIYTTDSDYEHKNGSILFRDEILEEHEKFLIQKNLVPNH 237
           C+  K E+  Y  L G  + GV+Y  D+ Y    GS +F+DE+   HE  L+Q +L+  H
Sbjct: 327 CLNEK-EKLVYAPLSG--VGGVLYDKDAVYVDLGGSHVFQDEVGPTHE--LVQ-SLISTH 380

Query: 238 VAFNYKV 258
              + K+
Sbjct: 381 STIDAKM 387


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,497,766
Number of Sequences: 237096
Number of extensions: 2343132
Number of successful extensions: 4103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4103
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)