Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1083
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z29121-2|CAA82388.2|  294|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical
           protein F28E10.1a protein.
          Length = 1134

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/86 (26%), Positives = 38/86 (44%)
 Frame = +3

Query: 186 IGRTRKVSNSKEFGSKPRRLQL*SVIVSIPRTRPGIPFTINKMNTYNFRKNNYSPLLMPY 365
           + R + +  S   GS P   +  + ++ IP  RP  P    KM T   R+   +    P 
Sbjct: 10  MSRNKSIIRSSSSGSYPYP-RTHTTLMVIPSNRPPPPPQPVKMFTGVRRRPPLNRACPPI 68

Query: 366 PTSKESENIISVYKTVEEAVKGTGSS 443
           P SK +E+I+S    + E  K   ++
Sbjct: 69  PESKSNESIMSHASRISEHQKAAAAA 94


>Z29121-2|CAA82388.2|  294|Caenorhabditis elegans Hypothetical
           protein ZK757.2 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 369 TSKESENIISVYKTVEEAVKGTGSSIRGS*MYLVLGL*RSTTYSL 503
           T+  S +  +VYK +EEA KG G ++    +   +G+ RS T+ +
Sbjct: 67  TTDLSPHWANVYKEIEEARKGAGRAL----LLCAMGISRSATFGI 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,181,145
Number of Sequences: 27780
Number of extensions: 407935
Number of successful extensions: 1065
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)