Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1083
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00190.1 68417.m00020 pectinesterase family protein contains ...    31   1.1  
At3g07870.1 68416.m00962 F-box family protein contains F-box dom...    29   3.4  
At5g56800.1 68418.m07088 hypothetical protein                          28   7.9  
At4g37100.1 68417.m05255 hypothetical protein                          28   7.9  
At3g06560.1 68416.m00762 poly (A) polymerase family protein simi...    28   7.9  
At1g05670.1 68414.m00588 UDP-glucoronosyl/UDP-glucosyl transfera...    28   7.9  

>At4g00190.1 68417.m00020 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 474

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 402 YKTVEEAVKGTGSSIRGS*MYLV 470
           YKT++EAV G G  ++GS  Y++
Sbjct: 175 YKTIQEAVNGAGERLKGSPRYVI 197


>At3g07870.1 68416.m00962 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 417

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 268 LFRGRGQVYHSQSTR*ILTTSVKTITVHYSCLILRRKNQKTLYRSTK 408
           ++RGRG++ + QS   ILT S KT     S   L +   K + RS++
Sbjct: 194 IYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSE 240


>At5g56800.1 68418.m07088 hypothetical protein
          Length = 344

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +2

Query: 455 IDVPGLRSLTIDYIFPCNKPS 517
           I+VP LRSL+IDY +  ++P+
Sbjct: 123 INVPSLRSLSIDYSWAVSRPA 143


>At4g37100.1 68417.m05255 hypothetical protein
          Length = 896

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +3

Query: 141 RLRTQKWFNLIPGRNIGRTRKVSNSKEFGSKPRRLQL*SVIVSIPRTRPG 290
           R  T+  F L+ GR+ GR+R +    E  SK RR+      VS     PG
Sbjct: 624 RRETEGEFRLLGGRDGGRSRLLGVEDEHPSKGRRVSFNMERVSHSIVEPG 673


>At3g06560.1 68416.m00762 poly (A) polymerase family protein similar
           to SP|Q9BWT3 Poly(A) polymerase gamma (EC 2.7.7.19) (PAP
           gamma) (Polynucleotide adenylyltransferase gamma) (SRP
           RNA 3' adenylating enzyme) {Homo sapiens}; contains Pfam
           profiles PF04926: Poly(A) polymerase predicted RNA
           binding domain, PF04928: Poly(A) polymerase central
           domain
          Length = 483

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 431 YWFVDTGFIDVPGLRSLTIDYIFPCNKPS-RTSV-TITVTLSLPFRLRKNVSGGSNVKS 601
           YW +    I+V  + S+ ID++   N  S R +V  I +TL    +L KN   GSN +S
Sbjct: 377 YWGLQLRTINVSDIESVKIDFLKNVNSGSFRGTVGRIQLTLVKASQLPKNGECGSNNRS 435


>At1g05670.1 68414.m00588 UDP-glucoronosyl/UDP-glucosyl transferase
            family protein similar to UDP-glucose:salicylic acid
            glucosyltransferase [Nicotiana tabacum] GI:7385017;
            contains Pfam profiles PF00201: UDP-glucoronosyl and
            UDP-glucosyl transferase, PF01535: PPR repeat
          Length = 1184

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +1

Query: 103  GYDIDGVIYTTDSDYEHKNGSILFRDEILEEHEKFLIQKNLVPNHVAFN 249
            G + D V YTT  D   K+G +    EIL+E    ++ K L P  V FN
Sbjct: 964  GLNADTVTYTTLMDAYCKSGEMDKAQEILKE----MLGKGLQPTIVTFN 1008


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,852,115
Number of Sequences: 28952
Number of extensions: 372624
Number of successful extensions: 1001
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)