Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1081
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    29   0.90 
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    29   0.90 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    27   2.1  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   3.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   4.8  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   4.8  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.4  

>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -1

Query: 467 LKY*LAKTNITHEHRPDPAPDRIRFPSKPDTPRSSEPILIPKLRIQFAD 321
           ++Y   K+++T E + D  P R R    P  P SSE  L P   +  AD
Sbjct: 408 MRYLDLKSDLTVEKKSDIYPSRARISISPMLPTSSEDNLHPLQPLTTAD 456


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 19/74 (25%), Positives = 36/74 (48%)
 Frame = -3

Query: 657 SSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRNVRRFSRCHIQYIQFLR 478
           SS+++ E  S      +  +KP+R TA K + + ++ GP+  R +  F+      + F +
Sbjct: 335 SSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSFAGEQPGDLSFQK 394

Query: 477 PHYIKILTR*NEHN 436
              I I+ R   H+
Sbjct: 395 GDIIDIVERSGSHD 408


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 579 ARKIRGRPENAGPDPVRNVRRFSR 508
           AR I GRPEN G   ++N+ R S+
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSK 237


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -1

Query: 257 GTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 138
           GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 374 GTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 423  TRPGTGPHPLPVQTRHAPVLRANPYSEVTDPICRLP 316
            +RP T P P P + + APV + +    V  PI   P
Sbjct: 980  SRPRTAPIPEPEEQKKAPVEKKDAEKSVQAPIPAQP 1015


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 435 ARTSTRPGTGPHPLPVQTRHAPV 367
           A+ S  P   P PL +QTR AP+
Sbjct: 410 AQFSPYPAVAPSPLALQTRGAPI 432


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -3

Query: 174 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 37
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,182,702
Number of Sequences: 5004
Number of extensions: 69764
Number of successful extensions: 225
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)